Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5461 ATGGGAAATTCAAAGAAAGAAGAAGAAAGATTCGAAAGAGTAATTCGAGGTCTTTTAAAACTTCCGGAAAATAGAAGATGCATCAATTGCAATACCTTGGGACCACAATATGTCTGCACAACTTTCTCAACATTTGTCTGCACAAATTGCAGTGGATTACATCGAGAGTTCACACATAGAGTGAAATCTGTGTCAATGGCTAAATTTACTCCAGAAGAAGTCACTGCTCTTCAAGCTGGTGGCAATGAGAGAGCAAAGCAAATTTATTTCAAAGGATGGGATCCGCTACGACATTCTTATCCTGATTCCAGTAATATGCACAGACTTAGAGATTTTATCAAGCATGTCTATGTGGACAGAAAATATACGGGCGAAAGAAGTCAAGAAAATCTTCCGAAGATTAGAGTGAACGACAAGGAGGAGTCCTGTGAGAGTAAGAAAAGTAGTGCATTTCGTTTAGAGTTCATAACTACGAAGTCAAGCCCTGGTCCTGGTGCAAGAAGCAGTCCCGGTCCAAGAAGTGACGACGCGAGTTTCAGATTTGTATATGATGAAAGCAGAAGTCCTAGATATGTTAAAAAATATTCAAGATATGGAGGGTTAAGCAGAAGTCCTATAAAATTTGAGGTTGTTGATGACAGGTTTCGAGACGACGATTTTAGAAACCGCAGGCATTCAAATCTTGAATCAAAGCTAAAACAACTTTCATTAGAAGGTCCGAAGAATGTGGACAAACTCCAAGCTCCGGTTCAACCCTCTTTGGGTGAAATAATAATGGAGAATAATCCATCTTCACAAGTTACAACTTCTGGTGGAGAAGGTTCTATTGAGGAAAAACCATCTGAACAAAAAAGTAATAAATCAAAAAGCTTCAATGATTTGAGTATTGTAGCTGTACAAGAGACACCAAGTATGGCACAAGAAAGTGAAAATAACTGGGCCTCATTTGAAGTTTCTACAGATGAAAAAAATGTTACTGAAACTCCAAATACCAACACAACAGAACCAAAACCTGAGCCAACAATTTCAAATCCTCTAGACCTTTTACTTCTTGAATTGTCAGGTCCTTTTGCTCCAACCACTAGTGACATATCAGAAGTTCCAAGTGGTGCTATTGTTCCAACAACTACAACAGTAGAAAAGGCTTCTACATGGGATTTTCCATCTACTTCAATGGAGCAGAACACTGCATCATGTTATGAGCTTGCCCTAATTTCTAATGAAGATCCTCCACCACAACCTGAGATACATGAGACAGAAGACTCCATTGAAGTTTCTCATGGAGATAAATCACAGATAGAAGACTCTATTGAAGTTTCACATGTTCATGAACCACCAAGCATGCAATACCTCCCTTCTGTTTCAGATGGTTGTAGTTCAACAACACTACAAACAAATTCACCAAACAATGATTTAGCTTCAAATAATGAGACATCATTTTCTCCTAATACACATGAATCATCATATGCTTTTGATGAACTATCTTTTCAAACCACTTCAAATCCTACTCAAGACACCAAACCTGATGTTGGCTCCCAACCTAGTACTACAGTGGAAACAAAGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTTTCTACAAGATACTTATCTGGCCCTGCACCACATGTAGGTTGGCAGAATGTTCAACATCATGTCATGGGATATGACATGCAGTATTATCCTAATGCAATGCCTCCCTCAGCACTTCCAATTGCACCAAATTATATGAACCCGTTTGAAGTAACTGAAGGGAGAAGTCTAGTGCATGCAACATCATGTCCTACCATGGAATCATTGCATGGTGTGCTACCAACAAGAACAGGACTAATGCACACTTCAAGTCTTGGTTCTTTAGATGCAATGATGCCTCAATCCACAAGCTATGCATCTCCAATTACTGGTATTGTTATTATTCATGATTCAATCATCTCAGGTGTATGCTTTGATCAAGTTAATAATCAAGATCAACATTATAGATCACAAAGAGTTGGCATTTTCAATGGTTTTGGATCTCTAGACACGATTCAACAGTCATATGGGGGATATGGGACACATGAAATTCCAAATTCTTTTTCCAATACAAGAAGAAATCCATTTGAATAA 2109 0.3845 MGNSKKEEERFERVIRGLLKLPENRRCINCNTLGPQYVCTTFSTFVCTNCSGLHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKGWDPLRHSYPDSSNMHRLRDFIKHVYVDRKYTGERSQENLPKIRVNDKEESCESKKSSAFRLEFITTKSSPGPGARSSPGPRSDDASFRFVYDESRSPRYVKKYSRYGGLSRSPIKFEVVDDRFRDDDFRNRRHSNLESKLKQLSLEGPKNVDKLQAPVQPSLGEIIMENNPSSQVTTSGGEGSIEEKPSEQKSNKSKSFNDLSIVAVQETPSMAQESENNWASFEVSTDEKNVTETPNTNTTEPKPEPTISNPLDLLLLELSGPFAPTTSDISEVPSGAIVPTTTTVEKASTWDFPSTSMEQNTASCYELALISNEDPPPQPEIHETEDSIEVSHGDKSQIEDSIEVSHVHEPPSMQYLPSVSDGCSSTTLQTNSPNNDLASNNETSFSPNTHESSYAFDELSFQTTSNPTQDTKPDVGSQPSTTVETKSSGRMELPEDLFSTRYLSGPAPHVGWQNVQHHVMGYDMQYYPNAMPPSALPIAPNYMNPFEVTEGRSLVHATSCPTMESLHGVLPTRTGLMHTSSLGSLDAMMPQSTSYASPITGIVIIHDSIISGVCFDQVNNQDQHYRSQRVGIFNGFGSLDTIQQSYGGYGTHEIPNSFSNTRRNPFE* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5461 702 CDD ArfGap_AGFG 12 122 - -
Mal1g5461 702 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Mal1g5461 702 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Mal1g5461 702 MobiDBLite consensus disorder prediction 316 343 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 406 430 - -
Mal1g5461 702 PANTHER ARFGAP/RECO-RELATED 1 702 IPR044820 GO:0005096
Mal1g5461 702 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Mal1g5461 702 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Mal1g5461 702 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Mal1g5461 702 MobiDBLite consensus disorder prediction 498 525 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 156 178 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 256 292 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 316 340 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 446 486 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 452 486 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 498 523 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 413 430 - -
Mal1g5461 702 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Mal1g5461 702 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Mal1g5461 702 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Mal1g5461 702 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 702 - -
Mal1g5461 702 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5461 Mal-Chr1 129192894 129197350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5461 12 151 C2H2 Transcription Factor Family AT4G05330 34.247 9.31e-13 68.2