Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5448 ATGGGCGAGGTGGCAGTGTTGCACTCTGAGCCTCTGCACTTTGAATGCAATGACACGAAACATATGACCGAAGAAGGCGTTTATCCTCCAAAATCAAATCCGGAATCCTTCCCTGGAGAAGAATCAAGTCAATCTATAAACACAAATGATTTGCAGGATAAGGGATATATGGAACATGGATGCCAACACTACCGGAGAAGATGCCGAATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAAGCAAAAAATGATATAAATCTAGATTATAAGCATAGACACGACATGCCTCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGCACTGAACAAGAGGCTCACCAAAATTGCGTTAATTGTGGTGTTTGCCTGGGCAAGTACTTTTGTGACATATGCAAGCTCTACGATGATGATATATCTAAGCAGCAGTACCATTGTTATGGCTGTGGAATTTGCAGAACTGGTGGACATGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCGTGCGGTCATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTACCAATTCGCATGCCCTCTCTGTTCAAAGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACGCCAATGCCTGGGCCATATCAAAATAAAATGGTATGGATTCTGTGCAATGATTGTGGAAAAAACTCTAATGTTCGGTTCCATTTTGTGGCGCAAAAATGCCTCAACTGCAATTCCTACAACACACGACAGACGAGAGGCTGA 921 0.4224 MGEVAVLHSEPLHFECNDTKHMTEEGVYPPKSNPESFPGEESSQSINTNDLQDKGYMEHGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINLDYKHRHDMPRHQVKQVICSLCGTEQEAHQNCVNCGVCLGKYFCDICKLYDDDISKQQYHCYGCGICRTGGHENFFHCNKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHYQFACPLCSKSVCDMSKVWEKLDMEIAATPMPGPYQNKMVWILCNDCGKNSNVRFHFVAQKCLNCNSYNTRQTRG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5448 306 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 306 - -
Mal1g5448 306 MobiDBLite consensus disorder prediction 23 49 - -
Mal1g5448 306 SMART ring_2 197 239 IPR001841 -
Mal1g5448 306 ProSiteProfiles Zinc finger RING-type profile. 197 240 IPR001841 -
Mal1g5448 306 SUPERFAMILY CHY zinc finger-like 58 131 IPR037274 GO:0008270
Mal1g5448 306 ProSiteProfiles Zinc finger CHY-type profile. 54 130 IPR008913 GO:0008270
Mal1g5448 306 Pfam Zinc-ribbon 244 302 IPR039512 -
Mal1g5448 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 257 IPR013083 -
Mal1g5448 306 Gene3D - 268 306 - -
Mal1g5448 306 SUPERFAMILY Zinc hairpin stack 133 190 IPR037275 -
Mal1g5448 306 SUPERFAMILY RING/U-box 196 244 - -
Mal1g5448 306 Pfam Ring finger domain 196 239 IPR001841 -
Mal1g5448 306 Pfam CHY zinc finger 61 142 IPR008913 GO:0008270
Mal1g5448 306 ProSiteProfiles Zinc finger CTCHY-type profile. 132 196 IPR017921 -
Mal1g5448 306 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 30 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5448 Mal-Chr1 128947475 128955320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5448 59 306 C2H2 Transcription Factor Family AT3G18290 38.583 2.80e-52 182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5448 1 128947475 128955320 Mal2g0804 2 9313071 9327580 PCT