Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5408 ATGTCAGGATTAACGTGCAATTCTTGCAACACCGAATTCACGCATGACGCAGATCAAAAGCTTCATTACAAATCTGAATGGCATCGCTATAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGAGTGACGGAAGCATTGTTTCTAGCTAGACAAGCTGCACTTGCTCAAGAGAGAGATAAATCTAATGAAAGCCCTATGCTCTATAGCTGTGGCCTATGTGGCAAGGGGTACAAAAGTGAGAAGGCTCATGCCGAGCATCTTAAGTCGAGAACTCATATGATGCGGGCTTCTGAAGGAGATAGTCAGTCAGATGGGAAGGCTATAATTAAGCCACTTCCACCACGCGTTGTGAATAAGCCTCCTTCTAAAAGAGTGGTTGATAACTCTGCTGAAGATGAAGAAAGTGAAGATGAATGGGTGGAGGTTAATTCTGATGATGATCTGGCTGGTGATGCTGCAAAGTCCTTGACGGATATGACCATAGACGAGAATGCTGAAAATGATGACATGGACGAAGATGATGATGATGGTCTGGACTTAGATCCATCATGTTGCTTTATGTGTGATCATAAGCACAAAACAATAGAAAACTGCATGGTTCACATGCACAAGCACCATGGATTCTTCATTCCAGATGTTGAGTATTTGAAAGATCCAAAAGGGCTCCTTACTTATCTTGGACTGAAAGTCAAAAGAGACTACTTGTGTCTGTACTGCAACGATCGGTGTCATCCTTTTAGCAGCTTGGAAGCAGTCAGGAAACACATGGTAGCAAAAAATCACTGCAAAGTGCATTATGGTGATGATGACGATGAGGAGGAAGTAGAGTTGGAAGAATTCTATGATTATACCAGCAGTTATGTTGATGAGCAAGGAAAGCAGCTAGTTGTATCTGGTGATACTGATAATAGTATAGAACTTAGCGATGGGTCTGAGCTCGTAATCACCAAGATGTCTGGTGACAAAAAATCAACCAGAACTCTAGGTTCCCGCGAATACTTGCGTTATTATCGTCAGAAACCACGCCCATCACCAGCGAATAACATTGCCATTACTGCGGAATTGGCTTCAAGGTACAGGAGCATGGGTTTGGCCACTGTCCAATCAAGGCAGCAAATTGTGAGAATGAAAGTGTTGAAGCAGATGAACAGATCAGGTGTGGAGCATATGCGTAGCAAGATGGGGATGAAGAGTAATGTAATCCGGAACCTGCCAAACAATGTCACATATTAG 1233 0.4331 MSGLTCNSCNTEFTHDADQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQERDKSNESPMLYSCGLCGKGYKSEKAHAEHLKSRTHMMRASEGDSQSDGKAIIKPLPPRVVNKPPSKRVVDNSAEDEESEDEWVEVNSDDDLAGDAAKSLTDMTIDENAENDDMDEDDDDGLDLDPSCCFMCDHKHKTIENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHMVAKNHCKVHYGDDDDEEEVELEEFYDYTSSYVDEQGKQLVVSGDTDNSIELSDGSELVITKMSGDKKSTRTLGSREYLRYYRQKPRPSPANNIAITAELASRYRSMGLATVQSRQQIVRMKVLKQMNRSGVEHMRSKMGMKSNVIRNLPNNVTY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5408 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Mal1g5408 410 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Mal1g5408 410 SMART c2h2final6 68 92 IPR013087 -
Mal1g5408 410 SMART c2h2final6 4 28 IPR013087 -
Mal1g5408 410 SMART c2h2final6 234 261 IPR013087 -
Mal1g5408 410 PANTHER ZINC FINGER PROTEIN 622 1 410 IPR040025 -
Mal1g5408 410 PANTHER ZINC FINGER PROTEIN-RELATED 1 410 - -
Mal1g5408 410 MobiDBLite consensus disorder prediction 156 175 - -
Mal1g5408 410 Pfam Zinc-finger of C2H2 type 68 92 - -
Mal1g5408 410 MobiDBLite consensus disorder prediction 131 145 - -
Mal1g5408 410 Pfam C2H2 type zinc-finger (2 copies) 185 286 IPR041661 -
Mal1g5408 410 SUPERFAMILY beta-beta-alpha zinc fingers 170 244 IPR036236 -
Mal1g5408 410 SUPERFAMILY beta-beta-alpha zinc fingers 58 98 IPR036236 -
Mal1g5408 410 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Mal1g5408 410 MobiDBLite consensus disorder prediction 89 147 - -
Mal1g5408 410 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5408 1 410 C2H2 Transcription Factor Family AT4G31420 62.892 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5408 K14816 - gmx:100809681 608.216