Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5396 ATGGATGAACGTTCTAGCAAAAGAGTTGATCGTAATACCAGATATACTGCCAATACCAGAGATCGGAATGATCAAACTCGCAGCCGAGTGGGTTGTAGTAGTACAGCCAACCCGCCTAAGGTTGCTCAAGTCAGATATGTTGAAAAAGGTAAATCGTTAAGGCCATCAGGACAGTCATCATCAAGTGACAAGGAGGTAATTGGTAGTTCCCGTAGAACAACTACTAACCCAGCAAAACCACTTATAAAGCCTCGAAGAACATTAACTTCAAGTGGGACTCAAGCTGAAAAGGAAGGGACAGAGTCTACTAAAGGGATTTTGATGGAAGTAGGAAAATCTAGTGGAGTATCAAATTTAAGATCTCAGAGGAATTTTAATCAAAGACCTGGATTGCATCGAAAAGAAAACGAAAGCATTGCTCCGGTGACACAAGCTGCTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAACACTGTATCCGATGTCATCCCTTCTTGCTCATCATCAGATTCTACCGTTAATAGAAGGAAGGCTACTGTGATAAAAAAGAGCAACTCTGAAGGGGAAAGTAGCTCCACTGTTAAAGGGAAAAAGATGACTGCGTCTTCATCGGAACGATTGAATTCTGGCTCCAGAAAGGGCATATCTATATCCGATGCAAGAGGATCTAGAAATATTGCTCCTCCTCACAGAGACAGTAGCAGAGAATCAGTTAGAACTGTAAGATCAGTTGGTGGTTATGCCAGGGGGAGATTTTCTACCCAAGGAAACGAAAACCCCAGGAAAACCAATGAGTCCCCCGTTGTATCCCCTATTTCGCCTCATTCTATTGATCTTAATTCTCCTGTCACTGAGGAGTTATACGGTATGATGCCTAATTCTCCTGAAGAATTTGGCATCCCACATTCTCTAATAATTCAGGATGGCTCTCGGCATCGGCGCAACAATATGGATGATATGTCAGAGGTATTATTGGCACTTGGGAGAATTGAACAAGATGAAGAGTTAACCCAAGAGCAAATTCATTTACTAGAAACCAGCTCGGATCTTGATGAACTTAACATCTATGATCATCATAGAGACATGCGGTTGGATATTGACAACATGTCATATGAGGAACTCTTGGCTCTCGAAGAGAGGATGGGTACCGTGAGCACAGCTCTCACAGAGGAAGCACTCTCAGATAGTCTTAAAAAAAGTATCTATCAGCCTGCGCCTTCAGATGATACAGCCGACTATGCTAATGAGGATAAGGATGATATCAAATGCTGCATTTGCCAGGAAGAATATGTTGCTGGAGATGAAGTTGGAAGACTGCAATGCGCGCATAAATTTCATGTGCTTTGTATAGAGGACTGGTTGAGGCTGAAGAACTGGTGCCCTTTTTGTAAAGAGTCAGCAGCACCGTCCAATTCATCTTCAGCTAGTTAA 1434 0.4268 MDERSSKRVDRNTRYTANTRDRNDQTRSRVGCSSTANPPKVAQVRYVEKGKSLRPSGQSSSSDKEVIGSSRRTTTNPAKPLIKPRRTLTSSGTQAEKEGTESTKGILMEVGKSSGVSNLRSQRNFNQRPGLHRKENESIAPVTQAASSKYGLRNLRCNTVSDVIPSCSSSDSTVNRRKATVIKKSNSEGESSSTVKGKKMTASSSERLNSGSRKGISISDARGSRNIAPPHRDSSRESVRTVRSVGGYARGRFSTQGNENPRKTNESPVVSPISPHSIDLNSPVTEELYGMMPNSPEEFGIPHSLIIQDGSRHRRNNMDDMSEVLLALGRIEQDEELTQEQIHLLETSSDLDELNIYDHHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALSDSLKKSIYQPAPSDDTADYANEDKDDIKCCICQEEYVAGDEVGRLQCAHKFHVLCIEDWLRLKNWCPFCKESAAPSNSSSAS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5396 477 MobiDBLite consensus disorder prediction 53 77 - -
Mal1g5396 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 470 IPR013083 -
Mal1g5396 477 MobiDBLite consensus disorder prediction 1 102 - -
Mal1g5396 477 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 469 IPR045191 GO:0061630
Mal1g5396 477 SUPERFAMILY RING/U-box 418 468 - -
Mal1g5396 477 SMART ring_2 424 464 IPR001841 -
Mal1g5396 477 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 5 469 - -
Mal1g5396 477 Pfam Ring finger domain 423 465 IPR001841 -
Mal1g5396 477 ProSiteProfiles Zinc finger RING-type profile. 424 465 IPR001841 -
Mal1g5396 477 MobiDBLite consensus disorder prediction 251 279 - -
Mal1g5396 477 MobiDBLite consensus disorder prediction 165 279 - -
Mal1g5396 477 MobiDBLite consensus disorder prediction 1 27 - -
Mal1g5396 477 MobiDBLite consensus disorder prediction 185 219 - -
Mal1g5396 477 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5396 Mal-Chr1 128131038 128133174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5396 321 468 C3H Transcription Factor Family AT2G15530 41.892 1.75e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5396 - - mtr:MTR_1g009680 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5396 1 128131038 128133174 Mal2g0770 2 8958443 8960661 PCT