Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5386 ATGTCTCGTGTGTATGTGGGTAATCTGGATTCAAGAGTGTCGGAGAGGGATCTTGAAGATGAATTTCGTGTTTTTGGTGTAATCCGAAGTGTTTGGGTTGCTCGAAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATTCGCGAATTAGATGGCAAGAACGGTTGGAGGGTAGAGCTTTCTCACAATTCTAGAAATGGTGGTGGTGGCGGCGGTGGCGGTGGCGGTGGAGGTCGTGGAGGTGGTCGTGGCGGTGGTTCTGATTTGAAGTGTTACGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGTGCAGGAAGACGCCGTAGCCGCAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGGCGAAGGAGTTACAGTCCTCGCGGGAGGTCCCCCAGGCGCCGCAGTGTGTCACCTCGTGGACGCAGCTACAGCAGGTCACCACCTCCTTACCGTGGGCGTGAGGAGGTGCCATATGCTAATGGAAATGGCATTAGGGATCGACGCCGAAGCAGAAGTTGA 573 0.5375 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRNGGGGGGGGGGGGRGGGRGGGSDLKCYECGEPGHFARECRNRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGIRDRRRSRS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5386 190 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Mal1g5386 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Mal1g5386 190 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 182 - -
Mal1g5386 190 SMART rrm1_1 3 69 IPR000504 GO:0003723
Mal1g5386 190 ProSiteProfiles Zinc finger CCHC-type profile. 98 114 IPR001878 GO:0003676|GO:0008270
Mal1g5386 190 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1 2 182 - -
Mal1g5386 190 MobiDBLite consensus disorder prediction 66 190 - -
Mal1g5386 190 Gene3D - 98 156 - -
Mal1g5386 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mal1g5386 190 CDD RRM_SRSF3_like 3 71 - -
Mal1g5386 190 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Mal1g5386 190 SUPERFAMILY Retrovirus zinc finger-like domains 89 116 IPR036875 GO:0003676|GO:0008270
Mal1g5386 190 Gene3D - 1 97 IPR012677 -
Mal1g5386 190 SUPERFAMILY RNA-binding domain, RBD 3 94 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5386 Mal-Chr1 127922120 127925188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5386 2 61 Eukaryotic Initiation Factors Gene Family AT1G49760 39.062 2.51e-06 45.1