Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5309 ATGGATTTGGATAGTATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCACATCATCAACAGCATCATCATCACTCTGAGTTTTCTTCATTGAAACCTCTTAATGGAGGAAACAATAATCATGGTGTTATTGGTTCTACTGCTATTGCTCCTGCTACAAGTGTTCATGAGTTGTTGGAATGCCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAACGGTCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCAACTTGTAGACAAGAGCTTGGAGATATAAGGTGTCTGGCACTGGAAAAGGTTGCTGAATCACTTGAGTTACCATGCAAATACTACTCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTTCCTTCCTTGTTGCACATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACGTTCAATCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAGGCTCGGAACTATACCTATAGCCTCGAGGTTGGAGCAAATGGAAGAAAACTCATTTGGGAGGGTACACCACGGAGTATCCGCGATAGCCACCGTAAAGTTCGAGATAGTCACGACGGCCTCATAATTCAACGAAATATGGCCCTATTTTTCTCTGGTGGTGATAGGAAGGAACTGAAATTAAGAGTCACAGGAAGAATATGGAAAGAACAACAAAATCCAGATGGTGGGGTGTGTATACCAAATCTTTGCAGCTGA 1002 0.4281 MDLDSIECVSSSDGMDEDEIQHRILHPHHQQHHHHSEFSSLKPLNGGNNNHGVIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAVGDISFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5309 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 175 IPR013083 -
Mal1g5309 333 CDD Sina 185 313 - -
Mal1g5309 333 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 176 312 IPR008974 GO:0005515
Mal1g5309 333 SUPERFAMILY RING/U-box 63 111 - -
Mal1g5309 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 123 IPR013083 -
Mal1g5309 333 SUPERFAMILY TRAF domain-like 124 316 - -
Mal1g5309 333 ProSiteProfiles Zinc finger SIAH-type profile. 124 184 IPR013010 GO:0008270
Mal1g5309 333 Pfam Seven in absentia protein family 113 312 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal1g5309 333 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 324 - -
Mal1g5309 333 ProSiteProfiles Zinc finger RING-type profile. 71 107 IPR001841 -
Mal1g5309 333 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 324 - -
Mal1g5309 333 CDD RING-HC_SIAHs 69 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5309 Mal-Chr1 126554187 126560096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5309 42 319 C3H Transcription Factor Family AT2G41980 76.259 2.33e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5309 K04506 - fve:101313744 636.721