Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5293 ATGGCTAGGCTCAGTGAAGAAGAAGTTCAATTTTTTGATGCACAAGATGATATTGTGTCAATCTCAGATGCAAATGGTGGTGCTACTGACAACCCTGAAGTTGATTCTGGTCCTCCTTTGGTGGAGGGTTTGTTGAGAGATTCTGGATATGAATTGTGGACTAGGAGTCCGGGTAGTGTTCGAGAGCGTAGGAGTAAGTTTATAAAGTGGATGGAATTGAGTTTGGATCAGAAAAACCTTGAGAATTCGGTAGATGGAAGTAGTTTTGAAAGGGAAGATGAGATGAATAAAATGAAGGATGGTGGTAGCAGTGTGACCAAAAGTAATCATTTTATGGAGGATTTCTTTTCAAGCCGGTTATCGATGTCTTGTTTGTCTTCCATGAATTCTTCAGAATTTGGTGGTTTGGTGGATAATTTGGCATGCCAAGATAGGAATGACGGAGGGGAAGTAGGTTTGGATCGGTTAGTGGTTTCGGATGAATCTGAGAACGCCGCTGAGGTGTCTTCTACCACTTACCAACACGAGTTTGGTGAGGAGTTCGAGGAGACAGGTGTGTTTGAGTCGTGGACGAAGAGGGCTAAAAAGGGTTGGTTAAGAAAATTGCGTTCGATGACATGCATGATGGATGGACAACATGGAGAATCTGAAAACAAGAAGCACGAAGGTGGTGTACCATTCTCGGGTTGTAAGATTCAGCGAGTAAAGGTTCGTCAAAGCAGGAAACAAAGAAAGGAACTTTCAGCTCTTTATATGGGACAAGATATTCAAGCGCACGAAGGTCCAATTTTTACCATGAAATTTAGTCCTGACGGCCAGTATCTTGCTAGTGCCGGCGAAGATGGAATAGTGCGATTGTGGCAAGTTGTTGAGGATGAGAGACATAATGAAATCGACATTCCAGAAGTTGATACATCCTGTATTTACTTTACAGTAAACGATCTCTCTGAGTTGACACCCTTGTTTATGGATAAGGATAAAATTAGAAATGTGAAGAGCCTGAAAAAGACATCAGATTCAGCTTGCATCATTTTCCCTCCTAAGGTTTTTCGGTTGTTGGAGAAACCACTGCATGAGTTCCATGGTCATAAAGGTGAAGTTTTGGATCTCTCTTGGTCAAAGAATAATTATCTTCTGTCGTCTTCAGTTGATAAAACTGCTCGTCTATGGCAAGTGGGACACGACTGCTGCTTGAAGGTTTTCTCACACAGTAACTATGTGACATGCATACAGTTCAATCCTGTGGATGATAATTATTTCATTAGCGGATCAATAGATGGAAAAGTGCGCTTATGGGAAATTCCTGATTGTCATGTTGTTGATTGGACCGATGTCAAGGAAATTGTCACCGCAGTGTGCTATCAACCTGATGGACAGGGAGGGATAATTGGTTCCATGACAGGCAATTGTTGGTTTTACAATGTATCAGATAATCAATTCCAGATGCAATCACAACTATGCTTACTTGGCAAAAAGAAATCTTCCGGGAGAGGAGGAATAACCGGTTTTCAGTTTCTTCCACAAGATTGTAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTCAGAATCATTGAAGGGCTTAATGTCGTTGGCAAATTCAAAGGCCTTAGTACAGGGAGCCTAATGTCCGCATCTTTTACTTCAGACGGAAAGCACATTTTATCGGCCTGTGAAGACTCCAATGTATATCTGTGGAATGTTAGTGATGACGAGTCTCACTCCACAAAAGCTAAGAAGATTAAGTCCTGCGAGCGGTTTTTTTCAAATGCATCTGTTGCAGTACCTTGGTGTGGTTTGAAACCTGATAACATTGAAATTGAAAATTCTAAACAATTGGATGTCCTAAATAAGAGTTCACCCCAAGCTGTATGCCTCGATCCACCGTCTTCTTTTTCTCTAAGCCAAGATTTTTTCTTGGATTCTATTCCGAAAGGTTCCGCAACTTATCCAGAGGAGAAACTTCCTACTTCAAGCCCTAAGAGTAAAAAATCTGCACTGCACAAATCTGCATACAAGTTCTTGAAATCTTCATGCAAGAGTACTTCGAATTGTCATGCTTGGGGTCTAGTCATCGTGACTGCCGGTTGGGATGGGCGAATAAAATCATTCCACAATTACGGATTACCTGTACTCCTTTGA 2142 0.4146 MARLSEEEVQFFDAQDDIVSISDANGGATDNPEVDSGPPLVEGLLRDSGYELWTRSPGSVRERRSKFIKWMELSLDQKNLENSVDGSSFEREDEMNKMKDGGSSVTKSNHFMEDFFSSRLSMSCLSSMNSSEFGGLVDNLACQDRNDGGEVGLDRLVVSDESENAAEVSSTTYQHEFGEEFEETGVFESWTKRAKKGWLRKLRSMTCMMDGQHGESENKKHEGGVPFSGCKIQRVKVRQSRKQRKELSALYMGQDIQAHEGPIFTMKFSPDGQYLASAGEDGIVRLWQVVEDERHNEIDIPEVDTSCIYFTVNDLSELTPLFMDKDKIRNVKSLKKTSDSACIIFPPKVFRLLEKPLHEFHGHKGEVLDLSWSKNNYLLSSSVDKTARLWQVGHDCCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRLWEIPDCHVVDWTDVKEIVTAVCYQPDGQGGIIGSMTGNCWFYNVSDNQFQMQSQLCLLGKKKSSGRGGITGFQFLPQDCNKVMVTCADSQVRIIEGLNVVGKFKGLSTGSLMSASFTSDGKHILSACEDSNVYLWNVSDDESHSTKAKKIKSCERFFSNASVAVPWCGLKPDNIEIENSKQLDVLNKSSPQAVCLDPPSSFSLSQDFFLDSIPKGSATYPEEKLPTSSPKSKKSALHKSAYKFLKSSCKSTSNCHAWGLVIVTAGWDGRIKSFHNYGLPVLL* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5293 713 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 434 - -
Mal1g5293 713 Gene3D - 494 705 IPR015943 GO:0005515
Mal1g5293 713 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 712 - -
Mal1g5293 713 PANTHER WD REPEAT DOMAIN 44 6 712 IPR040324 -
Mal1g5293 713 ProSitePatterns Trp-Asp (WD) repeats signature. 554 568 IPR019775 -
Mal1g5293 713 MobiDBLite consensus disorder prediction 83 104 - -
Mal1g5293 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 392 IPR001680 GO:0005515
Mal1g5293 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 539 576 IPR001680 GO:0005515
Mal1g5293 713 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Mal1g5293 713 MobiDBLite consensus disorder prediction 85 100 - -
Mal1g5293 713 SMART WD40_4 394 433 IPR001680 GO:0005515
Mal1g5293 713 SMART WD40_4 527 567 IPR001680 GO:0005515
Mal1g5293 713 SMART WD40_4 249 288 IPR001680 GO:0005515
Mal1g5293 713 SMART WD40_4 485 526 IPR001680 GO:0005515
Mal1g5293 713 SMART WD40_4 353 391 IPR001680 GO:0005515
Mal1g5293 713 SMART WD40_4 435 474 IPR001680 GO:0005515
Mal1g5293 713 Gene3D - 227 493 IPR015943 GO:0005515
Mal1g5293 713 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 392 - -
Mal1g5293 713 Pfam WD domain, G-beta repeat 397 432 IPR001680 GO:0005515
Mal1g5293 713 Pfam WD domain, G-beta repeat 257 287 IPR001680 GO:0005515
Mal1g5293 713 Pfam WD domain, G-beta repeat 355 390 IPR001680 GO:0005515
Mal1g5293 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515
Mal1g5293 713 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 434 IPR001680 GO:0005515
Mal1g5293 713 PRINTS G protein beta WD-40 repeat signature 378 392 IPR020472 -
Mal1g5293 713 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Mal1g5293 713 PRINTS G protein beta WD-40 repeat signature 420 434 IPR020472 -
Mal1g5293 713 SUPERFAMILY WD40 repeat-like 255 703 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5293 Mal-Chr1 126212144 126215131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5293 352 564 U-box Gene Family AT2G33340 24.889 3.58e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5293 - - mtr:MTR_1g007740 1238.02