Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5289 ATGGCTTCACCACTTCGTCGAAGAAGAACACAAGCTCCAATTCCACCTCCCAAAAAACCCTCCTCAAACTTCAACGACGTCGTTTGCCAGAAATGCAACTCCGGCAAATCCCCAACCAAGTTGCTTCTCTGCGACAATTGCGACAACGGCTATCATCTCTTCTGCCTCACACCCATTCTTCCCTCCGTCCCCAAATCCTCTTGGTTTTGCCCCTCCTGCTCTCACAACCCCAAAATCCCCAAATCTTTTCCTCTTGTACAAACCAAGATTATTGATTTCTTCAAAATTCAACGATCTGATGCATCTCAGATTCCGAATCAAGATTCGAAGAAGAAGAGGAAGCGGAGTAGTAGTTTGGTGGTTTCGAAAAAGAGAAGGAAGCTGTTGCCTTTTGTTCCGAGTGATGATTTAAAGAGGAGGTTAGAACAGATGGCGTCGTTGGCAACTGCGTTGACTGCAACTAAAACGGAGTTCAGTAATGAGCTTATGTATATGCCTGGAATGGCCCCCAGAGATGCTAATTCTCCTGCTCTTGAACGTGGGGGAATGCAGGTCTTATCGAAAGAAGACACTGAGACTCTAAACATGTGCAGAAGCATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTGTTTATGATCCTGTGGAAGGGTTCACTGTAGAAGCAGATAAACCCATAAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGATTATTTAAAGAATCGAGAATATGATGATGGAGATAGCATAATGACACTTCTTTCTGCCTCTGATTCTTCACAATCTCTTGTCATCTGCCCAGATAAACGTAGTAACATAGCACGTTTCATTAATGGCATAAACAATCACACACCTGAAGGAAAAAAGAAGCAGAACTTAAAATGTGTGAGATTTAACGTTGATAGCGAATCTCGGGTTCTTTTAATTGCAAATAGAGATATAGCAAAGGGGGAAAGGTTGTACTATGACTACAATGGATATGAACATGAATATCCAACGGAACATTTTGTCTAA 1026 0.4191 MASPLRRRRTQAPIPPPKKPSSNFNDVVCQKCNSGKSPTKLLLCDNCDNGYHLFCLTPILPSVPKSSWFCPSCSHNPKIPKSFPLVQTKIIDFFKIQRSDASQIPNQDSKKKRKRSSSLVVSKKRRKLLPFVPSDDLKRRLEQMASLATALTATKTEFSNELMYMPGMAPRDANSPALERGGMQVLSKEDTETLNMCRSMMERGECPPLMVVYDPVEGFTVEADKPIKDLTIITEYVGDVDYLKNREYDDGDSIMTLLSASDSSQSLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFNVDSESRVLLIANRDIAKGERLYYDYNGYEHEYPTEHFV* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5289 341 Gene3D - 1 76 - -
Mal1g5289 341 PANTHER HISTONE ACETYLTRANSFERASE 5 338 - -
Mal1g5289 341 CDD PHD_RSF1 29 73 - -
Mal1g5289 341 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 5 338 - -
Mal1g5289 341 CDD SET_ATXR5_6-like 204 341 - -
Mal1g5289 341 ProSiteProfiles Zinc finger PHD-type profile. 26 76 IPR019787 -
Mal1g5289 341 SUPERFAMILY FYVE/PHD zinc finger 22 84 IPR011011 -
Mal1g5289 341 Pfam SET domain 254 329 IPR001214 GO:0005515
Mal1g5289 341 SMART PHD_3 28 74 IPR001965 -
Mal1g5289 341 ProSitePatterns Zinc finger PHD-type signature. 29 73 IPR019786 -
Mal1g5289 341 ProSiteProfiles SET domain profile. 207 329 IPR001214 GO:0005515
Mal1g5289 341 Pfam PHD-finger 28 75 IPR019787 -
Mal1g5289 341 MobiDBLite consensus disorder prediction 1 22 - -
Mal1g5289 341 Gene3D SET domain 113 341 IPR046341 -
Mal1g5289 341 SUPERFAMILY SET domain 199 329 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5289 Mal-Chr1 126129310 126132110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5289 18 73 C2H2 Transcription Factor Family AT3G01460 42.857 5.26e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal1g5289 SET 0.00012 No_clan