Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5256 ATGGAAGGCACAACCAACAACATTTTCCAAACCACCTTTTGCCCACAACTCCCATCCTCCGACAACAACAAGACAAACAACACTACCGATCAATTCATTGTTGAGGATCTCCTTAACCTCAACAATGACGTCGACGATGCTACCATCATTTCCGACACCAACCTTGACTCTGCAACCGGAAACTCAACCGCCTCTTCGTCCACCGTCACCGTTGTCAATAGCGTCAGCTCGTCATCATATTCCGGATGTGACCCCAATGTCGTTCCTGATATTGGCTGTCAGAATCTCTCTAACTGCAATTTTTCCGGAGACCTGTGTGTTCCGGATGATGATTTAGCGGAGCTGGAATGGCTTTCGAATATTGTGGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCAAAACCAGGACGAAGAGGCTCGTGAGCTTTCTCAACCCAACCGAAACAATCCCATATTCAACAAGGAAGTTTCGGTCCCAGCTAAGGCCCGTAGCAAGAGGACACGTGGGCCCCCATGCGACTGGAGCTCACGTCTTCTTGTTCTGGCTCAAACAACACCATCTTCTTCTGAGCCAAAACTTCTTATTCCCACCCCCACCTTACCTTCAGTCACTGTTCCAAAGAAGCAAGCAAAGACGGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCTGGTGGAGATGGTCGAAGGTGTCTGCATTGCATGACTGACAAGACGCCACAGTGGCGAACTGGGCCTAATGGCCCAAAAACTCTTTGCAATGCATGTGGTGTAAGATATAAGTCAGGTCGATTGGTGCCTGAATACAGGCCTGCAGCTAGCCCAACATTTGTGCTGACCAAACACTCCAACTCTCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACATCAACAAAACCAGATGTTACAACATCAGAGTATGATGTTTGATATGTCCAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG 1047 0.4766 MEGTTNNIFQTTFCPQLPSSDNNKTNNTTDQFIVEDLLNLNNDVDDATIISDTNLDSATGNSTASSSTVTVVNSVSSSSYSGCDPNVVPDIGCQNLSNCNFSGDLCVPDDDLAELEWLSNIVEESFSSEDLQKMQLISGMKVQNQDEEARELSQPNRNNPIFNKEVSVPAKARSKRTRGPPCDWSSRLLVLAQTTPSSSEPKLLIPTPTLPSVTVPKKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQMLQHQSMMFDMSNNDDYLIHQHMGPDFRQMM* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5256 348 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Mal1g5256 348 PANTHER GATA TRANSCRIPTION FACTOR 1 348 - -
Mal1g5256 348 Gene3D - 233 318 IPR013088 GO:0006355|GO:0008270
Mal1g5256 348 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Mal1g5256 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 298 - -
Mal1g5256 348 MobiDBLite consensus disorder prediction 195 240 - -
Mal1g5256 348 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Mal1g5256 348 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Mal1g5256 348 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Mal1g5256 348 MobiDBLite consensus disorder prediction 221 240 - -
Mal1g5256 348 PIRSF Txn_fac_GATA_plant 12 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mal1g5256 348 PANTHER GATA TRANSCRIPTION FACTOR 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5256 Mal-Chr1 125700103 125701583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5256 100 348 C2C2-Gata Transcription Factor Family AT5G25830 57.895 1.35e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal1g5256 GATA 1.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5256 - - cam:101502134 490.345