Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5253 ATGAGTAGTAAGAAGAATAGCAGTTCCGTTTCTATGCAAATAGACATAATGATCATGGGCAGAAGGAGGATCTCCCTGAGGGTTCACAGTTTAGACACGATAATCAATGTGAAGGAGAAGATTCTTGCCAGTGAAGGGATCCCAGTGGACCAGCAACGTCTGATATTTGCCGATGAGCAACTACGAGACAATCAGACCCTTGACGATTATAACATCCAAGAGAAGTCAACCCTCGACCTCATCATCCGCCTCATTGGGGACTAG 264 0.4545 MSSKKNSSSVSMQIDIMIMGRRRISLRVHSLDTIINVKEKILASEGIPVDQQRLIFADEQLRDNQTLDDYNIQEKSTLDLIIRLIGD* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5253 87 PANTHER POLYUBIQUITIN 8-RELATED 6 83 - -
Mal1g5253 87 ProSiteProfiles Ubiquitin domain profile. 12 87 IPR000626 GO:0005515
Mal1g5253 87 PANTHER UBIQUITIN 6 83 - -
Mal1g5253 87 Pfam Ubiquitin family 19 84 IPR000626 GO:0005515
Mal1g5253 87 PRINTS Ubiquitin signature 22 42 IPR019956 -
Mal1g5253 87 PRINTS Ubiquitin signature 43 63 IPR019956 -
Mal1g5253 87 PRINTS Ubiquitin signature 64 85 IPR019956 -
Mal1g5253 87 SMART ubq_7 12 83 IPR000626 GO:0005515
Mal1g5253 87 Gene3D - 4 87 - -
Mal1g5253 87 SUPERFAMILY Ubiquitin-like 11 86 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5253 Mal-Chr1 125678233 125679592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5253 12 86 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 58.667 2.65e-23 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5253 - K08770 bcom:BAUCODRAFT_490647 90.1225