Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5145 ATGGCATCAGTGTCTACTCAACCACAGTTTCGTTACACGCAGCCACCATCAAAGGTGCTTCATTTGAGAAACTTGCCATGGGAGTGTATAGAAGAGGAGCTGATTGAACTCGGAAAGCCATTTGGGAAAGTTGTGAACACAAAGTGCAATGTTGGAGCAAATCGAAATCAAGCTTTCATTGAATTTGCAGATATAAATCAAGCCATTGCGATGATATCATATTATGCCTCATCATCAGAGCCTGCTCAAGTACGAGGGAAAACTGTGTATCTGCAGTATTCCAATAGACAAGAAATAGTGAATAATAAAACTGCTGCCGATGTTGCTGGTAATGTACTGTTGGTAACAATTGAGGGTGAAGACGCACGCCTTGTGAGCATAGATGTTTTGCACTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACTTTTGAGAAGACAGCTGGATTCCAGGCACTGGTGCAATTCTCAGATCAAGAAACTGCCACTTCTGCAAAGGATGCTTTGGATGGAAGATGCATACCTAGCTACCTGCTCCCTGGGCATGTGGGACCATGTACCCTTAAGATCACATATTCTGGACACTCAGACTTAAGTGTCAAGTTTCAAAGTCACAGAAGCAGAGACTACACGAATCCTTACCTTCCTGTTGCTCAATCAGCTATGGAGGGAAACGGGCAGTCCGTGATTGGTTTGGATGGGAAGAGACTGGAAGCCGAGAGTAATGTTCTTCTTGCATCAATTGAGAACATGCAGTATGCCGTAACCTTGGATGTCTTGCACATGGTTTTCTCTTCTTTTGGACCCATCCAAAAGATTGCAATGTTTGATAAAAATGGTGGTTTACAGGCTCTGGTTCAATATCCAGATGTTCAAACAGCCATTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATTTATGATGGGGGATTTTGCAAGCTTCACCTTTCCTATTCACGTCATACTGATCTGAGTATAAAGGTCAATAATGACAGAAGCAGAGACTATACCATGCCTACTGCACCGCCACCAGTTATGAATGCTCAGCCCTCAATTTTGGGGCAACAAGCTCCCATGACTGGTCCTCCTGCTCAACAGTACAATACCGCTCAGTACGCTCCAAATAATAACCAGAATTTTATACCTCAAAATCAGCCTGGATGGGGAACAGCTCCACCGCAAGCAATGCAACAACGGATGCATAATAATCCTTACATGCCACCTGGTACGATGCCACCACAAAGTGGCCCTGGAATGATGCAGTATCCCGGTCACATTCAATAG 1290 0.4419 MASVSTQPQFRYTQPPSKVLHLRNLPWECIEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGEDARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDQETATSAKDALDGRCIPSYLLPGHVGPCTLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGNGQSVIGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSSFGPIQKIAMFDKNGGLQALVQYPDVQTAIVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTMPTAPPPVMNAQPSILGQQAPMTGPPAQQYNTAQYAPNNNQNFIPQNQPGWGTAPPQAMQQRMHNNPYMPPGTMPPQSGPGMMQYPGHIQ* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5145 429 Gene3D - 112 222 IPR012677 -
Mal1g5145 429 Gene3D - 242 345 IPR012677 -
Mal1g5145 429 SUPERFAMILY RNA-binding domain, RBD 125 218 IPR035979 GO:0003676
Mal1g5145 429 Gene3D - 5 111 IPR012677 -
Mal1g5145 429 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 425 - -
Mal1g5145 429 SMART rrm1_1 247 317 IPR000504 GO:0003723
Mal1g5145 429 SMART rrm1_1 19 92 IPR000504 GO:0003723
Mal1g5145 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 73 IPR000504 GO:0003723
Mal1g5145 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 179 IPR000504 GO:0003723
Mal1g5145 429 CDD RRM3_PTBPH1_PTBPH2 243 339 IPR034794 -
Mal1g5145 429 CDD RRM1_PTBPH1_PTBPH2 16 96 IPR034792 -
Mal1g5145 429 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 1 425 - -
Mal1g5145 429 CDD RRM2_PTBPH1_PTBPH2 110 204 IPR034793 -
Mal1g5145 429 SUPERFAMILY RNA-binding domain, RBD 250 343 IPR035979 GO:0003676
Mal1g5145 429 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Mal1g5145 429 Pfam RRM-like domain 242 321 IPR021790 -
Mal1g5145 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5145 Mal-Chr1 123621412 123628629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5145 16 425 Eukaryotic Initiation Factors Gene Family AT1G71770 23.218 3.85e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5145 K14948 - gmx:100810102 756.518