Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5142 ATGGAAACTCAAAAGGTTCCAATAGATCATGACACTTTGTTATTATCTGATATATTCAATGAAACAGAATTTGGTGCAGAGGATCTCTTTTCCATTTTGGAAAATTTTAATAATTTTCCACTCATTATGAATGAGCAAAACTCAAAAACAACATCTTCAAGTGCTCCTCAAGATTCTGAAACTGAACTTGCTGAAACATCACAGAAATGCAAGAGACAGAAGATTGTGACAACTTCAATAGAGGAACCTAACAATGATGGACAACATCGAATGTCACATATCGCGGTCGAGCGCAATCGAAGAAAGCAAATGAATGAGCAGTTATCTATCTTGAAGTCACTTATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCAATAGTTGAAGGAGTAATTGATTACATCAATGAGTTACATCAACTACTACAATGTCTAGAATCCAAGAAACAAAGAAAAGTTTACAATGAAGTGCTAAGTCCTAGAATAATCTTACCTATTAGTCCAAGAACTCCACATTCACAACAATGGTTGCAACACTGTGGTGGTTATCTTTCATCTGAACCTTCCCCTACTTCTTCAGCTTCTTCCATCAATGACAACATCAACGAGCTTGTTGCGAATTCAAAGTCTTCGGTTGCTGATGTTGAGGTTAAGTTTTGTGGTGCACATGTTCTTTTGAAAACAATTTCGTCGCCAATTCCCCGGCAGGCTTTGAGAATAATGTCTGTCCTTGAAGATCTAGCGCTTGAAATTGTTCATGCCAGTGTTAGTACTTCTGATGAAACCATGCTAAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTTGCTCAACAAATTCAGCAAACATTCTGTTAA 879 0.3697 METQKVPIDHDTLLLSDIFNETEFGAEDLFSILENFNNFPLIMNEQNSKTTSSSAPQDSETELAETSQKCKRQKIVTTSIEEPNNDGQHRMSHIAVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYINELHQLLQCLESKKQRKVYNEVLSPRIILPISPRTPHSQQWLQHCGGYLSSEPSPTSSASSINDNINELVANSKSSVADVEVKFCGAHVLLKTISSPIPRQALRIMSVLEDLALEIVHASVSTSDETMLNSFTIKIGIECQLSAEELAQQIQQTFC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5142 292 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 161 292 - -
Mal1g5142 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 139 IPR011598 GO:0046983
Mal1g5142 292 PANTHER TRANSCRIPTION FACTOR FAMA 161 292 IPR044283 GO:0003700|GO:0010052
Mal1g5142 292 Gene3D - 78 154 IPR036638 GO:0046983
Mal1g5142 292 PANTHER TRANSCRIPTION FACTOR FAMA 17 173 IPR044283 GO:0003700|GO:0010052
Mal1g5142 292 MobiDBLite consensus disorder prediction 47 68 - -
Mal1g5142 292 MobiDBLite consensus disorder prediction 47 63 - -
Mal1g5142 292 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 17 173 - -
Mal1g5142 292 Pfam Helix-loop-helix DNA-binding domain 90 139 IPR011598 GO:0046983
Mal1g5142 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 157 IPR036638 GO:0046983
Mal1g5142 292 CDD bHLH_AtFAMA_like 91 163 - -
Mal1g5142 292 SMART finulus 94 145 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5142 Mal-Chr1 123551379 123554188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5142 19 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 42.136 2.31e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g5142 HLH 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5142 K20558 - gmx:100777437 333.183