Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5141 ATGGAGCATGGAATTTTGTCCACTAACCAAAGTCGATCAACACAATCAAGCTCTGGTAAGCACTCTAAACAACCAAAAATCAGCAACAACAACACTAAGCAACATTTACCTAAACCAAAGGATGAGGAGCTGCGCTTTCCCATCGTGCAATTGACAAGAATCATGCGGCGTGCTCTTCCCCCGAATGTAAAAATCTATGATTGCGCTAAAGAGTCGATTCAATTGTGTTTGTCTGAATTCATGAGCATCGTCACAAGTGAGGCTAACGAGCGGTGCAAGATGGAGCATCGAAAGATCGTTACAGCGAAAGATATAATATGGGCCATGGATAGGTTAGGCTTTGATGACTATGTTGGTCCTCTAGTCCTTTACCTTCAAAGGTACCATAACCATGAGACTCCTCTCAATGACTTGCCAATTACACATCGATTCGACAAGGATGGATTGGGTTCTAGTAGCTCGAACAATAGCAGTGATAATGTTCAACGTTGA 492 0.4268 MEHGILSTNQSRSTQSSSGKHSKQPKISNNNTKQHLPKPKDEELRFPIVQLTRIMRRALPPNVKIYDCAKESIQLCLSEFMSIVTSEANERCKMEHRKIVTAKDIIWAMDRLGFDDYVGPLVLYLQRYHNHETPLNDLPITHRFDKDGLGSSSSNNSSDNVQR* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5141 163 MobiDBLite consensus disorder prediction 1 42 - -
Mal1g5141 163 SUPERFAMILY Histone-fold 42 132 IPR009072 GO:0046982
Mal1g5141 163 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 10 132 - -
Mal1g5141 163 Gene3D Histone, subunit A 33 156 IPR009072 GO:0046982
Mal1g5141 163 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Mal1g5141 163 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Mal1g5141 163 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Mal1g5141 163 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 132 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal1g5141 163 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Mal1g5141 163 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5141 Mal-Chr1 123484178 123485177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5141 24 132 CCAAT-HAP3 Transcription Factor Family AT5G47670 52.252 5.01e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal1g5141 CBFD_NFYB_HMF 4e-16 CL0012