Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5119 ATGGAGAATCAACAATTAACTCCATTAATGGTTGATGAATTTCGTATGCCCATCAATCAATTGACAAGAATCATGCAGAGTGCTCTTCCCCCACACACAATAATCTCCGATGATGCTAAGGAGTTGGTTCAATTGTGTGTGTCTAAATTTATTAGCGAGATTACAACTGAGGCTATCCAGCAAGGTAAGGTAGAGAATCAAGAGACTGTTTCCGCTGAAGATTTACTGTGGACACTTTGGGCTTTGAGGAATATGTTCGACCTCTTGGTAAAGACCTTAAAAACTATCGCAACCATGAGGCTCAACTCAACATGGATGGGTCAGGTGCTAGTTGCTCAAACAATGGCACTGATGATGGCCAACGTTGATATGCAATTAATGTCATTGCCAAAGTAA 396 0.4091 MENQQLTPLMVDEFRMPINQLTRIMQSALPPHTIISDDAKELVQLCVSKFISEITTEAIQQGKVENQETVSAEDLLWTLWALRNMFDLLVKTLKTIATMRLNSTWMGQVLVAQTMALMMANVDMQLMSLPK* 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5119 131 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 15 78 IPR003958 -
Mal1g5119 131 Gene3D Histone, subunit A 8 102 IPR009072 GO:0046982
Mal1g5119 131 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 94 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal1g5119 131 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 8 94 - -
Mal1g5119 131 SUPERFAMILY Histone-fold 12 82 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5119 Mal-Chr1 123096628 123097023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5119 4 117 CCAAT-HAP3 Transcription Factor Family AT1G21970 39.831 1.54e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal1g5119 CBFD_NFYB_HMF 1.3e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5119 K08065 - vvi:100855401 75.0997