Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5118 ATGGACCAAGGAAGCCCCCCTGTTAACCATAGCCGTTCGGCACAAGCAAACTCTGCTGAAAGAAACACCGCCAACAACAACACCACCACTGGAGTTGGAATCGACAACCAACATCAAACTCCAACAATGGTAGAGGAAGTGCGTATGCCCATCAGTCATTTGACAAGAATCATGCAGAGTGCTCTTCCCCCAAATGCAGTAATCTCTGATGATGCTAAAGAGTTACTTCAATTCTGTTTGTCTAAATTTATTAGCAGAATCACAAGTGAGGCTATCCAGCAAGGCAAGGTAGAGCATCAAGAGATTGTTTCTGCTGAAGATTTATTGTGGACCATTAACATGCTGGGCTTTGAGGAATATGTTCGACCTCTTGGGAAAGACCTTAAAAATTATCGCAACCATGAGGCTCAGCTTAACATGGATGGGTCAGGTACTAGTGGCTCAAACAGTAGCAATGATGATGACCAGCATTGA 474 0.4409 MDQGSPPVNHSRSAQANSAERNTANNNTTTGVGIDNQHQTPTMVEEVRMPISHLTRIMQSALPPNAVISDDAKELLQFCLSKFISRITSEAIQQGKVEHQEIVSAEDLLWTINMLGFEEYVRPLGKDLKNYRNHEAQLNMDGSGTSGSNSSNDDDQH* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5118 157 MobiDBLite consensus disorder prediction 1 40 - -
Mal1g5118 157 MobiDBLite consensus disorder prediction 137 157 - -
Mal1g5118 157 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Mal1g5118 157 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Mal1g5118 157 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Mal1g5118 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 48 110 IPR003958 -
Mal1g5118 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal1g5118 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 17 137 - -
Mal1g5118 157 Gene3D Histone, subunit A 35 157 IPR009072 GO:0046982
Mal1g5118 157 SUPERFAMILY Histone-fold 45 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5118 Mal-Chr1 123073266 123074791 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5118 49 156 CCAAT-HAP3 Transcription Factor Family AT3G53340 42.593 2.22e-26 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal1g5118 CBFD_NFYB_HMF 4.1e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5118 K08065 - psom:113330240 97.0561