Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5090 ATGGATATAGATCGAGAAGCTACACAGTCAGAACATATGTCGTCTGTTTCAAATGTTCCATTATTTGCTAAAGAGGCAGATGCTGAAGTACCTCCATTACAAACCAGCAATGAATTGAACTTAGATGGTGCTATTGCTAATGATTCTGAATCTGATGACAATGACCTGTACTTAGCAGAGTGCCGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGCGGAAGCTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATACATGTCTTTAAATGATAAGAGTATTGCTGCTCTAGGTGTCGTTTTTGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTCAAAAGAAACAAGTCCCTGTTCTAGGACGGCACACTGCATATGATCTTGTTCTTCCAAAAGCTAACTTGGTAAAAGGAGCGGTTACTGGCATTGTGCCCATGGATCAAAGTAAAAGCTCAAGCTTTCGCCAAAGCTTCCAGACTGATCAGGTGGTGGGTATTAAGGAATATGGAGTAATAATGCCAGAATCTTTGGAGAAAAACAAACAAGAGAAACACGATATGGGTAAAGCATCGGGTAGAACTATGCCGCAAACTCAACCTCCTGATAAAAAATCGAGGGTACAAAAGATGACACAACGTGACTCCAATATACATGTGAAGTTAACAAATGTTTTCAAAGGGAAAACATTTTGTTTCTCGAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAGTGGATAAGTCAAGGGGGAGGAGAGATAATAAGTGGGCAAACAAAACAGAGTATCCACTATACTATTGAATGCCATGGTGGAAAACCCAGGTCGACAGGTGATTATGGAAGTACCTATATTTCCAGTCACTGGATACGATCTTGTTTGGAGGATGGATCCTTGCTGGATGTCGACAGTCATATTCTGTATTCTCCACTTCCCTGCCGTGTTCCCTTGCCTGGTTTTGAAAATCTCCGGTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTACTTTGGAACTTGTGTAAAGTTCTAGGAGCTAAATTTGCAGATAAGTTGACTAAGAAGGTCACCCATTTGTTGTGTAAATTTACCAATGGGCCCAAGTACGAGGCTTCTTGCAAGTGGGGGATCCGATCAGTTACATCTGAGTGGATATTTGAATGTGTCAAACAGAATGGAGTTATTGCCGTGGATCAATTTTTGCCCAAAGAAGTCACTACTCAAGACCGTGAGGCAGGAGTTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAATGACATGCCGTCCCAGTTTCCAAGTCAATCACAAAGTTTGAGAAACACCGCAAATAAAAATGTAGATAGTGGAGTTGCCAATCACGGGATTCATTCTAAAATATCAAGCATTAATAGCAAAAAGGCAAGGCTTGTGGAAGAACCTTGCCTGTATAATAAGGTACCTTCTACAGTAAATTCTGGTATTCATGTCTCTGACTTGAATTTCTCTAAAGACAATATGCTCAAAGATGCTCGGGAGGCTGTTCAAATCATAAATGACACGCCGTCCCAGTTTCCAAGTCAATCACAAAGTTTGAGAAACACGCCAGATAAAAATGTGGATAGTGGCGTTGCCAATCATGGGGTTCATTCTAAAATATCAAGCATTAATAGCAAAAAGGCAAGGCTCGTGGAAGAACCTGGCCTGTATAATAAGGTACCTTCTACAGTAAATTCAGGTATTCATGTCTCTGACTTGAATTTTTCTAAAGACAATATGCTCAAAGATGCTCGGGAGGAAACCCAGGAAGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGATGCAGGATCAGAGATCCCCAGGGAATACAGGGTGTGAAAGAAGTATTTACTCATCTGATTGTCCAGTCATTGGCGAAGACAGTCCAGATCCTCACACTGTCTTCGGATTATCGAAGCACTGGTTAAACAGAAGTGGAAGCAAGGGTGATACTACTGAGACTTCTAAAGACCGAAAAGCGGGATTGTATGATGCTTTTAGTGAAACACAAACAGAATCACAGGTTGTTGGTTATGAAGAAGATTTGACTGGAAGGCAAATGCTTATAGATAGAGTTCTAACTCGAAGTAGCATGCAGTGA 2163 0.4105 MDIDREATQSEHMSSVSNVPLFAKEADAEVPPLQTSNELNLDGAIANDSESDDNDLYLAECRISLVGFEASEMRKLVNMVRKGGGSRYMSLNDKSIAALGVVFVVKTSWLEDCDRQKKQVPVLGRHTAYDLVLPKANLVKGAVTGIVPMDQSKSSSFRQSFQTDQVVGIKEYGVIMPESLEKNKQEKHDMGKASGRTMPQTQPPDKKSRVQKMTQRDSNIHVKLTNVFKGKTFCFSNLFPEERRAEIVQWISQGGGEIISGQTKQSIHYTIECHGGKPRSTGDYGSTYISSHWIRSCLEDGSLLDVDSHILYSPLPCRVPLPGFENLRFCVSQYEEKDRILLWNLCKVLGAKFADKLTKKVTHLLCKFTNGPKYEASCKWGIRSVTSEWIFECVKQNGVIAVDQFLPKEVTTQDREAGVCTVSQFPTQAVRMINDMPSQFPSQSQSLRNTANKNVDSGVANHGIHSKISSINSKKARLVEEPCLYNKVPSTVNSGIHVSDLNFSKDNMLKDAREAVQIINDTPSQFPSQSQSLRNTPDKNVDSGVANHGVHSKISSINSKKARLVEEPGLYNKVPSTVNSGIHVSDLNFSKDNMLKDAREETQEVPDVAAAIEDLLEQTSKMQDQRSPGNTGCERSIYSSDCPVIGEDSPDPHTVFGLSKHWLNRSGSKGDTTETSKDRKAGLYDAFSETQTESQVVGYEEDLTGRQMLIDRVLTRSSMQ* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5090 720 Pfam twin BRCT domain 327 389 IPR001357 -
Mal1g5090 720 Gene3D BRCT domain 222 317 IPR036420 -
Mal1g5090 720 SUPERFAMILY BRCT domain 225 313 IPR036420 -
Mal1g5090 720 MobiDBLite consensus disorder prediction 181 214 - -
Mal1g5090 720 SUPERFAMILY BRCT domain 284 408 IPR036420 -
Mal1g5090 720 SUPERFAMILY BRCT domain 55 121 IPR036420 -
Mal1g5090 720 Pfam BRCT domain, a BRCA1 C-terminus domain 225 308 IPR001357 -
Mal1g5090 720 CDD BRCT_TopBP1_rpt2_like 322 397 - -
Mal1g5090 720 ProSiteProfiles BRCT domain profile. 223 311 IPR001357 -
Mal1g5090 720 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 17 708 - -
Mal1g5090 720 Gene3D BRCT domain 319 412 IPR036420 -
Mal1g5090 720 SMART BRCT_7 225 301 IPR001357 -
Mal1g5090 720 SMART BRCT_7 321 397 IPR001357 -
Mal1g5090 720 SMART BRCT_7 55 117 IPR001357 -
Mal1g5090 720 ProSiteProfiles BRCT domain profile. 324 407 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5090 Mal-Chr1 122505131 122513962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5090 603 719 Core DNA Replication Machinery Family AT1G77320 46.809 3.33e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5090 K10728 - gmx:100804966 724.161