Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5088 ATGAAGGATAGAGATATGGGGAGAGGAAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGACAAGTTACATTCTCAAAGAGGAAAAATGGAATTCTAAAGAAAGCTAAAGAAATCAATATTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTTCTCCTTGTGGAAAGATGCATGAATTCATTAGCCCTTCTACCTCGTTGATTGATATGCTGGAGAGATATCATAGAGCATCTGGAAAGAGGCTTTGGGATGCCAAACATGAGAACCTAAACAATGAAATTGAGAGACTCAAGAAAGAGAATGACAACATGCAAATGGAGCTCAGGCACTTGAAGGGAGAGAATATCAACTCACTAAACTACAAGGAGTTGATGAGGTTAGAGGATGCTTTAGAGAATGGTCTCCACACTATCCGTGACAAACAGATGGAAGTGTACCAGATGGTCAAGAGAAATGACAAGATCTTGGTGGAGGAGAATATGGAACTTAATTTTATCCTCCAGCAGCAACAACGCATGGCAGTGGAAGGTAGGAGAGAAATGGGTAATGATCAATTTGATGAGAGTGGAAGAGATTTCAGTTCCCAGATGCCATTTTCCTTGCAGCCAAATCTTCATGAAATGATCTAG 636 0.3994 MKDRDMGRGKIEIKRIENSSNRQVTFSKRKNGILKKAKEINILCDAQVSLIIFSPCGKMHEFISPSTSLIDMLERYHRASGKRLWDAKHENLNNEIERLKKENDNMQMELRHLKGENINSLNYKELMRLEDALENGLHTIRDKQMEVYQMVKRNDKILVEENMELNFILQQQQRMAVEGRREMGNDQFDESGRDFSSQMPFSLQPNLHEMI* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5088 211 SUPERFAMILY SRF-like 7 101 IPR036879 GO:0003677|GO:0046983
Mal1g5088 211 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Mal1g5088 211 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Mal1g5088 211 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Mal1g5088 211 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Mal1g5088 211 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 209 - -
Mal1g5088 211 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Mal1g5088 211 CDD MADS_MEF2_like 7 85 IPR033896 GO:0000977|GO:0045944
Mal1g5088 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Mal1g5088 211 Pfam K-box region 87 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g5088 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 6 209 - -
Mal1g5088 211 ProSiteProfiles K-box domain profile. 89 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g5088 211 Gene3D - 18 112 IPR036879 GO:0003677|GO:0046983
Mal1g5088 211 Coils Coil 82 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5088 Mal-Chr1 122472008 122473755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5088 6 148 MADS-box Gene Family AT5G20240 64.336 6.37e-65 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal1g5088 K-box 7.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5088 K09264 - gmx:100817554 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g5088 1 122472008 122473755 Mal1g5088 1 122472008 122473755 ECH