Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5070 ATGTTTTTACGCAACACTTTCTCGGTCGTGCCTATTCCTACTGAAGTGTTGGAACATGCTCTATTTCGTATGGGCGAGTGCGCCAGGAATATGATCATGGTCAATATTGAAGGACGTCTTATACTAGAGATGAATGTTTTTGTTCACGAAATTTCAAGTATTCGTGATGCTGGGAATGGTTTGAATTCATTGGAGAAGATCAAAGTGAATGATATTGCTACTCCTTCTTCATCAAGGGAACAATGTGCAATTTGTTTGGAGGAATTTTGTAATGGAACAGAAGTGTCACACATTGTTCGTACCAAGTGCATGCATGTTTTCCATCAACAATGTCTTGCCCGGTGGCTTAAGCAGTGTTGCATTACAAATCGATTATATTCCTGCCCAATGTGTCGTTTGGAAATTCAGTGA 411 0.399 MFLRNTFSVVPIPTEVLEHALFRMGECARNMIMVNIEGRLILEMNVFVHEISSIRDAGNGLNSLEKIKVNDIATPSSSREQCAICLEEFCNGTEVSHIVRTKCMHVFHQQCLARWLKQCCITNRLYSCPMCRLEIQ* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5070 136 PANTHER RING ZINC FINGER PROTEIN-RELATED 8 135 - -
Mal1g5070 136 Pfam Ring finger domain 81 132 IPR001841 -
Mal1g5070 136 SUPERFAMILY RING/U-box 81 135 - -
Mal1g5070 136 CDD RING-H2 82 132 - -
Mal1g5070 136 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 136 IPR013083 -
Mal1g5070 136 ProSiteProfiles Zinc finger RING-type profile. 82 132 IPR001841 -
Mal1g5070 136 SMART ring_2 82 131 IPR001841 -
Mal1g5070 136 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 8 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5070 Mal-Chr1 121931383 121931793 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5070 64 135 C3H Transcription Factor Family AT4G12190 38.889 4.17e-12 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5070 - K17821 mtr:MTR_1g029860 192.586