Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5069 ATGTCATCCACTAATGAATCCTATTTCATCCATATTGAAGAATCCCAAGACACCATTCCACAAAATTTTTGTCCACATGAATGTTTCCTCATTAAACTTTACCACTTCCACTCCACTTCATTCAACCATTATTCCTTCCTCATTCCTAGTAACATTTTATGTGATTATGATGAATTTGAATCAATGGATCCAGAAAGTTTATCCAATACCTTTTTGCGCGACACTTTCTCGTCCGTGCCTATTCCTTCTGATGTGATGGAACAAACCCTACTTCTTATGGGTGACTACGCTAGGCATATGAACCGAATCAACTTCGAAGGATATAGAATACTGGAGATGGATGTGTTGGTTAACGAAAATGGATCTATTACGACCCTAGAGAAGGTCAAATTGGAGGATATTGGTACTACTTGTTCAATGGAACAATGTGCAATTTGTTTGGAAGAATTTTGTTTTGGATCAGAAGAAGTGCAACACATTGTTCGTACCAAGTGCATGCATCTTTTCCATGAGCAATGTATTGCTCGATGGCTTAAGCAATGTGGCATTACCAATCGACAATATTCATGCCCATTGTGTCCTTCCCAAATTCAATGA 597 0.3819 MSSTNESYFIHIEESQDTIPQNFCPHECFLIKLYHFHSTSFNHYSFLIPSNILCDYDEFESMDPESLSNTFLRDTFSSVPIPSDVMEQTLLLMGDYARHMNRINFEGYRILEMDVLVNENGSITTLEKVKLEDIGTTCSMEQCAICLEEFCFGSEEVQHIVRTKCMHLFHEQCIARWLKQCGITNRQYSCPLCPSQIQ* 199
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5069 198 Pfam Ring finger domain 142 193 IPR001841 -
Mal1g5069 198 ProSiteProfiles Zinc finger RING-type profile. 143 193 IPR001841 -
Mal1g5069 198 PANTHER RING ZINC FINGER PROTEIN-RELATED 120 197 - -
Mal1g5069 198 SMART ring_2 143 193 IPR001841 -
Mal1g5069 198 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 120 197 - -
Mal1g5069 198 SUPERFAMILY RING/U-box 124 197 - -
Mal1g5069 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 198 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal1g5069 Mal-Chr1 121920965 121921561 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5069 126 197 C3H Transcription Factor Family AT4G12190 34.247 1.64e-07 45.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5069 - K17821 mtr:MTR_1g029910 281.952