Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5068 ATGTCATCCACTAATGAATCCTATTTCATCCATATTGAAGAATCCCAAGACACCATTCCACAAAATTTTTGTCCACATGAATGTTTCCTCATTAAACTTTACCACTTCCACTCCACTTCATTCAACCATTATTCCTTCCTCATTCCTAGTAACATTTTATGTGATTATGATGAATTTGAATCAATGGATCCAGAAAGTTTATCCAATACCTTTTTGCGCGACACTTTCTCGTCTGTGCCTATTCCTTCTGATGTGATGGAACAAACCCTACTTCTTATGGGTGACTACGCTAGGCATATGAACCGAGTCAACTTCGAAGGATATAGAATACTGGAGATGGATGTGTTGGTTAACGAAAATGGATCTATTACGACCCTAGAGAAGGTCAAATTGGAGGATATTGGTACTACTTGTTCAATGGAACAATGTGCAATTTGTTTGGAAGAATTTTGTTTTGGATCAGAAGAAGTGCAACACATTGTTCGTACCAAGTGCATGCATCTTTTCCATGAGCAATGTATTGCTCGATGGCTTAAGCAATGTGGCATTACCAATCGACAATATTCATGCCCATTGTGTCCTTCCCAAATTCAATGA 597 0.3819 MSSTNESYFIHIEESQDTIPQNFCPHECFLIKLYHFHSTSFNHYSFLIPSNILCDYDEFESMDPESLSNTFLRDTFSSVPIPSDVMEQTLLLMGDYARHMNRVNFEGYRILEMDVLVNENGSITTLEKVKLEDIGTTCSMEQCAICLEEFCFGSEEVQHIVRTKCMHLFHEQCIARWLKQCGITNRQYSCPLCPSQIQ* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5068 198 Pfam Ring finger domain 142 193 IPR001841 -
Mal1g5068 198 ProSiteProfiles Zinc finger RING-type profile. 143 193 IPR001841 -
Mal1g5068 198 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 111 197 - -
Mal1g5068 198 SUPERFAMILY RING/U-box 124 197 - -
Mal1g5068 198 SMART ring_2 143 193 IPR001841 -
Mal1g5068 198 PANTHER RING ZINC FINGER PROTEIN-RELATED 111 197 - -
Mal1g5068 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 198 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5068 Mal-Chr1 121902675 121903271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5068 126 197 C3H Transcription Factor Family AT4G12190 34.247 1.62e-07 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5068 - K17821 mtr:MTR_1g029910 282.337