Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5065 ATGTCATCCTCTAATGAATCCTATTTCATCCATATTGAAGAATCCCAAGACACCATTCCACAAAATTTTTGTCCACATGAATGTTTCCTCATTAAACTTCACCACTTCCACTTCACTTCATTCAACACTTATCCCTTCTTGATTCCTCGTAACATCTTATGTGATTATGATGAATTTGAATCCGTGGATTCGGATAGCCAATCCAATACTTTTTTGCACAACACTTTCTTGTCCGTGCCTATTCCTCCTGAAGTGTTGGAACAAACTTTGCTTCTTGTAAGTGACTACGCTAGGCATATGAACACGGTTAACTTCGAAGGATATAGAATATTGGAGATGGATGTGTTCGTTAACACAACGCCAAATTCTAGTGATGATGAGAATGCTATTGATCGTCAAAATGCATCTACTAAGACCCTTTCAAAGTTGTTGAAGAAGCTCAAAGTGGAAGATCTTGATACTCCTCTTTATTCAATGGAACAATGTGCAATTTGTTTGGAGCAATTTTGCGATGGATCAGAAGTACCACACATTGCTCGTACCAAGTGCATGCATCTTTTTCATGAGCGATGTATTGCTCGATGGCTTAAGCAATGTGGCATTACCAAAAGACTATATTCATGCCCGCTGTGTCGTTCCCAAATTCAATGA 651 0.3871 MSSSNESYFIHIEESQDTIPQNFCPHECFLIKLHHFHFTSFNTYPFLIPRNILCDYDEFESVDSDSQSNTFLHNTFLSVPIPPEVLEQTLLLVSDYARHMNTVNFEGYRILEMDVFVNTTPNSSDDENAIDRQNASTKTLSKLLKKLKVEDLDTPLYSMEQCAICLEQFCDGSEVPHIARTKCMHLFHERCIARWLKQCGITKRLYSCPLCRSQIQ* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5065 216 Pfam Ring finger domain 161 212 IPR001841 -
Mal1g5065 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 216 IPR013083 -
Mal1g5065 216 ProSiteProfiles Zinc finger RING-type profile. 162 212 IPR001841 -
Mal1g5065 216 PANTHER SI:CH211-59O9.10 109 216 - -
Mal1g5065 216 SUPERFAMILY RING/U-box 161 215 - -
Mal1g5065 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF12-B-LIKE 109 216 - -
Mal1g5065 216 SMART ring_2 162 211 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5065 Mal-Chr1 121794883 121795533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5065 143 215 C3H Transcription Factor Family AT4G12190 38.356 1.84e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5065 - K22378 mtr:MTR_1g029910 237.654