Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g5054 ATGTCTCACAATCGCATCACCACCGATTCCCCTCTCTCTCATCGCATAGTTCGTTCTTTCCTCCATTTCCTCAACCAAGTTGAACCTAGTGCTGGTGTTGATGCTGAAGGAATTGAGGTAGCTAGGGAGTGTTTGATAGAGGCTTTTAAGATTAACAACTCATCTTCTGTAACTGGTGAACCGGATTCGTTGATTGATATATTCAAGTCATTTGTTGCAAACAAGCAATGTGAAAGAAGTAAGGTGGATTCTGTGAAAGGTTCAAGTTCACTCTCTGCTCAGAATGCTGCTGCTGATGCTAAAGATCATCCCGAGGCTTCGAAATCCATGGATGAAGATTGGACACAGGACCCTCACAGTTCCGTGTCTAAAGATGAACTCTGTGGACAATTTTTTGCTGTTCTGGAGAAAAAACACTATTTCAGGACCACTATTGATGGAGGTGATGACATAGTGCAATTGGAGAAAGCATCTCGCTTATTTGATGATGGTTTTACGGAGATGGAAAGATCTGGGTGTCGGCAGTTTAATTTGAAGAATTTGGCTGAATCACTAAAAACACTAGGTAACAAGGCCATGCAATCCAAGCAATACTTTGATGCAATTGAGTTGTATAATTGTGCGATTGCGTTATATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTATACTCAAATTAACAGCTATAGAGAGGCAATCCAAGATTCTCTTAGATCTATCGAGATTGATCCGAACTACAGTAAGGCTTACAGTCGTCTCGGTTTAGCTTATTATGCACAAGGAAACTACAGAGATGCTATTGATAAAGGGTTTAAAAAAGCCTTGCAATTGGATCCCAACAATGAGTCTGTTAAAGAAAATATAAGGGTAGCTGAGCATAAACTGATGGAAGAGCGACATCGTGCAGATCACAATCAGAATTCAAGATCATCTCAAGAATTCCAAAACCATTATACAAGGGGATCAAGAAGCCATGCAGCTCCGCCTTCATTTGGCTCAATGCCATTTAACCCCAGCAATCTTGCAAGCATGTTCATGGAGGCCGCAAATGCGGGTCAGGGGTCACATTCTCAGGAAAGACAAGAAGATGCCAATAGTAGTGGAGCTAATGAACCTGGAATTCGATTTGGGGGCAATGTTAATGTAAACCATGGTCAAATCCCTCAGGAACTAAGAGGTGCCCTTCAATCTATGATGCATATGTTTTCAGGGAATGCACCTCCTGGGCAACCGCATGATCAAATGAATGGAAGTCACGAAGATGCCAATAGTAGCGAAGATAGTGAACCTGAAATTCAATTTGGGGGCAATGTTGATTTAAACTCTGATCAAATCCCTCAGGAAATAAGTGGTGTCTTTCAAAATATGATGGAGATGTTATCAGGGAATGCTCCTCCTGGGCAACCACATGATCAAACGAATGAAAGAACAGCACCAAACTAA 1452 0.4174 MSHNRITTDSPLSHRIVRSFLHFLNQVEPSAGVDAEGIEVARECLIEAFKINNSSSVTGEPDSLIDIFKSFVANKQCERSKVDSVKGSSSLSAQNAAADAKDHPEASKSMDEDWTQDPHSSVSKDELCGQFFAVLEKKHYFRTTIDGGDDIVQLEKASRLFDDGFTEMERSGCRQFNLKNLAESLKTLGNKAMQSKQYFDAIELYNCAIALYEKSAVYYCNRAAAYTQINSYREAIQDSLRSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFKKALQLDPNNESVKENIRVAEHKLMEERHRADHNQNSRSSQEFQNHYTRGSRSHAAPPSFGSMPFNPSNLASMFMEAANAGQGSHSQERQEDANSSGANEPGIRFGGNVNVNHGQIPQELRGALQSMMHMFSGNAPPGQPHDQMNGSHEDANSSEDSEPEIQFGGNVDLNSDQIPQEISGVFQNMMEMLSGNAPPGQPHDQTNERTAPN* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g5054 483 MobiDBLite consensus disorder prediction 101 120 - -
Mal1g5054 483 ProSiteProfiles TPR repeat profile. 250 284 IPR019734 GO:0005515
Mal1g5054 483 MobiDBLite consensus disorder prediction 352 387 - -
Mal1g5054 483 Gene3D Tetratricopeptide repeat domain 176 335 IPR011990 GO:0005515
Mal1g5054 483 MobiDBLite consensus disorder prediction 311 326 - -
Mal1g5054 483 Gene3D Immunoglobulin FC, subunit C 3 75 - -
Mal1g5054 483 MobiDBLite consensus disorder prediction 431 446 - -
Mal1g5054 483 MobiDBLite consensus disorder prediction 84 120 - -
Mal1g5054 483 PANTHER LD24721P 9 480 - -
Mal1g5054 483 PANTHER LD24721P 9 480 - -
Mal1g5054 483 MobiDBLite consensus disorder prediction 469 483 - -
Mal1g5054 483 MobiDBLite consensus disorder prediction 352 371 - -
Mal1g5054 483 Pfam TPR repeat 225 264 - -
Mal1g5054 483 SUPERFAMILY TPR-like 181 295 IPR011990 GO:0005515
Mal1g5054 483 SMART tpr_5 182 215 IPR019734 GO:0005515
Mal1g5054 483 SMART tpr_5 250 284 IPR019734 GO:0005515
Mal1g5054 483 SMART tpr_5 216 249 IPR019734 GO:0005515
Mal1g5054 483 MobiDBLite consensus disorder prediction 461 483 - -
Mal1g5054 483 MobiDBLite consensus disorder prediction 303 338 - -
Mal1g5054 483 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Mal1g5054 483 MobiDBLite consensus disorder prediction 403 446 - -
Mal1g5054 483 Coils Coil 284 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g5054 Mal-Chr1 121573479 121582902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g5054 181 280 U-box Gene Family AT3G07370 30.000 2.26e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g5054 K16365 - gmx:100799770 581.637