Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4960 ATGAATCAATGGAAGCCATCACCATCGCCGCCGCTAAACTCCTCCAAAACACCATCCCTTACGGTGGCTGACTCACCACTTCCGCTACACATCACCAACCGCAAAGACACTCTCAGGGAGAGGAGTGAGGTGGTGGAAGGTGGAGATCCAACTGTTGTTGCTAGAAAAGTTCAGAAGGCTGATCGTGAGAAAATCAGGAGGGTTCGATTGAATGATCATTTTCATCAATTGGGATACCTCATAGATCCTGATAGACCACGGAACGACAAGGCAACCATAATCACAGAGACAATCCAAGTGCTAAAGGACATAACATCTGAAGTTGATAGACTGAAAACAGAGCATAAATCACTTTCTGAAGAGTCACGTGAACTAATACAAGAAAAGAATGAACTCCGAGAAGAGAAAGCGTCTTTAAAATCTGATATAGAAAATCTTAATTCTCAGTATCAGCAGCGAGTCAGAGTCATGCCTCCATGGACTGCAATGGACCATTCTGTTATCATGAGTAGCCCTTATCCATATCCAGTTCCTATACCAATCCCTCCTGCTCCAGTTCCCGTTCACCCATCTATGCAGCCTTTTCCGAATCCTTACTTTGGAAACCAAAATCCTGGTCATATTCCAAGTCTATGCTCAATGTATATTCCATTCTCGGCTCCGGCTAACCCTCCAATCGAGATGCCATCAGCTCAGTATGCTTCTACGTCTCACATGTTTAGTCGAAAAGAGTCTCGAAGCAAGTCACCGGGTCATAGAAGAAGACCTAGTGATGTAGAAAGATGTAGCGTGTCTCCTGATGTGGCTACAGAACTTGAACTTAAGATGCCTGGATCATCAACACAACAGGATTGCTCGTCTGGAAGAAGGAAGGGCAAGCATTCGGTGATGAGTGATAGAATCATCATAGATGAGAGTGCTTCGAGCCGGTACTCTCCATCTCAGGGACTTCAAGATAGCTCCAACAGTGTCGGCGACACCCCAAAGGCCGTTGATTGA 999 0.4545 MNQWKPSPSPPLNSSKTPSLTVADSPLPLHITNRKDTLRERSEVVEGGDPTVVARKVQKADREKIRRVRLNDHFHQLGYLIDPDRPRNDKATIITETIQVLKDITSEVDRLKTEHKSLSEESRELIQEKNELREEKASLKSDIENLNSQYQQRVRVMPPWTAMDHSVIMSSPYPYPVPIPIPPAPVPVHPSMQPFPNPYFGNQNPGHIPSLCSMYIPFSAPANPPIEMPSAQYASTSHMFSRKESRSKSPGHRRRPSDVERCSVSPDVATELELKMPGSSTQQDCSSGRRKGKHSVMSDRIIIDESASSRYSPSQGLQDSSNSVGDTPKAVD* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4960 332 PANTHER TRANSCRIPTION FACTOR BHLH121 36 330 IPR044579 GO:0003700|GO:0055072
Mal1g4960 332 MobiDBLite consensus disorder prediction 1 42 - -
Mal1g4960 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 104 IPR011598 GO:0046983
Mal1g4960 332 Pfam Helix-loop-helix DNA-binding domain 55 103 IPR011598 GO:0046983
Mal1g4960 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 123 IPR036638 GO:0046983
Mal1g4960 332 MobiDBLite consensus disorder prediction 227 332 - -
Mal1g4960 332 MobiDBLite consensus disorder prediction 241 261 - -
Mal1g4960 332 MobiDBLite consensus disorder prediction 305 332 - -
Mal1g4960 332 Coils Coil 101 149 - -
Mal1g4960 332 Gene3D - 53 132 IPR036638 GO:0046983
Mal1g4960 332 CDD bHLH_AtILR3_like 59 133 - -
Mal1g4960 332 PANTHER TRANSCRIPTION FACTOR BHLH11 36 330 - -
Mal1g4960 332 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4960 Mal-Chr1 119842254 119844338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4960 36 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 51.779 3.12e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g4960 HLH 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4960 - - cam:101509613 387.497