Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4957 ATGGCACACAAATTTGTTAGCATATCTGAGATAAACTCTTCTAAATCATGTTGGAGTCTAAGAGCGAAAGTTCTTAGGTTGTGGGCTGTGAAAGACTTCAATAGAAACACATACCCATTTTCTGTTGAAATGGTCCTTATGGACTCTGAGGGAGGTAGGATTCATGCCACAATTAGGAGAACACTGCTTTATAAGTTTCAAAAGGAAGTTACCGAAGGGAAAGTATATGTTTTTGAAAATTTGGATGTTGCTGCCAATGGTGGCAATTATAGAACTACTAGACATGGATACAAGCTAAATTTTCAAATCGGTACTAAGATTTTTGAACTTTCACCTGGTGCTGTACGTGGCTCACCTTTCAAGTTTGTACCAATTCCTGAGATCTGTGGTGGGACATATGATTCAGATTACTTAGTTGACGTTGTTGGTATGCTGACTGGTGTGGGTACAGAACGTCAATATGAGAGAAATGGTAAAACGACGAAGCTAAATGTTATCGCTCTTGAGGCCGATGGCCATAAACTTCAGTGCACTCTATTTGGAAATTATGTAGATGACTTAAACTCTTTCTTGGCATCTGGTGATACTCTTAATACTGTAGTTGTTGTGCAACTTGGGAAGGTCAAGACCTTCCAAGATAAGTTGCACATTCAAAATTGTGTTGATTGTACCAAGATCATTTTTAATCCTACATGTGCTGAAGCTACTGAACTGAGAAACAGAATGCTTGGTAATGATGAGTCACCCTCATCTTTAACACTGTCACAAATTGCTGCTCAACAACCAATAGATCCATTGCAGGAATTTATATTCAACACTCCAAGGTCTACTATACAAGGACTTAAAGATTGCTTTCAGGATGCTGTATTCGTTGTTCTTGGCACTATTGAGCACATTGTCAACTCAGAAAATTGGTTCTACACCGCATGTGTTTGCAGCAAGTCTGTCTATCCAGATTCCAACATGTTTTTCTGTGAAAAATGCAACAAGCATGTTGTAAATGTTTTTCCAAGATATTCCATTAAGGCTCGTGTAATGGATGACACCGGAAGCGCCATCTTTGTTCTTTTTGATCATGATGCAACATTGTTGTTTAACAAATCTTGTGCTGAGATGGATGGAGCTGGAGGTGTGCCTGATGAGATTTATGGCTTGATTAACTCTACATATTTATTCAAGGTTGAATGTAAAGCTGTTTTTAGCCCTAGGTTTGAGAGGTCTTTTAGAGTGAAAAAAATATGCAATGATGTTGTCATTATCAAGAGTTTTAAGGACAAGTGGGCAAAAGAGGAGGCATTGTTCCTAAAAAATGCAAATGAAATGACCTCTTTGAGTGGTTTGTTGGAAAATGGGTTGAAGGGAAAAGCTGTTTGTGAAACAAATATTCTCTCCGAGGATATTGTAATCTCAAGTGCAATGCCATCTAAGGGGAAGGAAAAAGTTACTCACAATGTCAAACTAAGTGTATCACAGGATTTACTCCCTAAGTTTGAAGATGTTATTGTGGACCTTGAGCAAGATTCAACCCCTGTAGCACATATCTTAGTTGTGACTCACTTTGTTAGTGGTGCTATGGATGGAGCTAAAACCAGAAGCAAAATAGATAAAGAAGTTGAAGCTCTAAAAGTAATCACTTTGGTATGTTTGTCCTTTTGGATTGTATTTATGTGCGGTAATTCATATTTAATTAAAGATTCAATGATTAAGAGTTGA 1713 0.3765 MAHKFVSISEINSSKSCWSLRAKVLRLWAVKDFNRNTYPFSVEMVLMDSEGGRIHATIRRTLLYKFQKEVTEGKVYVFENLDVAANGGNYRTTRHGYKLNFQIGTKIFELSPGAVRGSPFKFVPIPEICGGTYDSDYLVDVVGMLTGVGTERQYERNGKTTKLNVIALEADGHKLQCTLFGNYVDDLNSFLASGDTLNTVVVVQLGKVKTFQDKLHIQNCVDCTKIIFNPTCAEATELRNRMLGNDESPSSLTLSQIAAQQPIDPLQEFIFNTPRSTIQGLKDCFQDAVFVVLGTIEHIVNSENWFYTACVCSKSVYPDSNMFFCEKCNKHVVNVFPRYSIKARVMDDTGSAIFVLFDHDATLLFNKSCAEMDGAGGVPDEIYGLINSTYLFKVECKAVFSPRFERSFRVKKICNDVVIIKSFKDKWAKEEALFLKNANEMTSLSGLLENGLKGKAVCETNILSEDIVISSAMPSKGKEKVTHNVKLSVSQDLLPKFEDVIVDLEQDSTPVAHILVVTHFVSGAMDGAKTRSKIDKEVEALKVITLVCLSFWIVFMCGNSYLIKDSMIKS* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4957 570 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
Mal1g4957 570 CDD RPA1_DBD_A_like 19 107 - -
Mal1g4957 570 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Mal1g4957 570 Gene3D - 115 250 IPR012340 -
Mal1g4957 570 SUPERFAMILY Nucleic acid-binding proteins 274 418 IPR012340 -
Mal1g4957 570 CDD RPA1_DBD_C 287 397 IPR013955 -
Mal1g4957 570 Gene3D - 2 109 IPR012340 -
Mal1g4957 570 Pfam Replication factor-A C terminal domain 290 373 IPR013955 -
Mal1g4957 570 CDD RPA1_DBD_B_like 140 242 - -
Mal1g4957 570 SUPERFAMILY Nucleic acid-binding proteins 4 110 IPR012340 -
Mal1g4957 570 PANTHER REPLICATION FACTOR A 1, RFA1 17 371 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal1g4957 570 Gene3D - 270 418 IPR012340 -
Mal1g4957 570 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 17 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4957 Mal-Chr1 119747056 119751153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4957 4 357 Core DNA Replication Machinery Family AT2G06510 23.387 5.27e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4957 - - mtr:MTR_4g036240 655.981