Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4880 ATGACTATGGATGAAGTGGACAGTAGCTCTGAGTGGAGCTGGGAGCAAGATAAAGCATTTGAAAATGCTTTGGCGACTTATCCTGAGGATGATTCGGATCGATGGGAGAAGATTGCGGCCGATGTACCGGGGAAGACTGTGGAAGAAATTAAACAGCATTATGAGCTTTTGGTTGATGATATTGGCCAGATTGAAGCTGGTTGTGTGCCTCTACCGTCGTATAATTCTTCTTCGGAGGGTTCAACAAGTCATGCTAGTGATGAAGGAGTTGGGGGGAAGAAGGGTGGTCATAATAGACACAAAAACGACGAGTCTAGCCATGGAACTAAGGGTTCAAGATCTGATCAAGAACGACGAAAGGGTATTGCTTGGACTGAGGAAGAACACAGGTTATTTCTTCTGGGCTTGGACAAGTACGGAAAAGGTGACTGGCGAAGCATATCAAGAAACTTTGTGGTGACTCGAACACCAACACAAGTAGCAAGCCATGCGCAAAAATACTTCATCCGATTGAATTCGATGAACAAAGACAGAAGGCGATCGAGCATACATGACATTACAAGCGTCAACAACGGAGATGTTTCAACGCCTCAAGGACCAATCACCGGTCAAACAAATGGTTCATCCGGAAATACTGCAGGCAAATCAGTCAAACAAGCCGTTCCGTCCACAACCGGAGTACCAGGTGCAGGAATGTACGCCGCCCCCACCATCGGACAACCTGTAGGAGGACCTTTAGTATCTGCTGTTGGCACCCCTGTGAATCTTTCTGCACCTCCACACATGGCATATGGTATTCGAGCACCAGTTTCAGGCACAGTTGTACCCGGTGCACCGGTGAACATGGTCCCTATGACATACCCTATGCCTCATTCTTCTGCTCCTCGCAGGTAA 894 0.4765 MTMDEVDSSSEWSWEQDKAFENALATYPEDDSDRWEKIAADVPGKTVEEIKQHYELLVDDIGQIEAGCVPLPSYNSSSEGSTSHASDEGVGGKKGGHNRHKNDESSHGTKGSRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSTPQGPITGQTNGSSGNTAGKSVKQAVPSTTGVPGAGMYAAPTIGQPVGGPLVSAVGTPVNLSAPPHMAYGIRAPVSGTVVPGAPVNMVPMTYPMPHSSAPRR* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4880 297 SUPERFAMILY Homeodomain-like 10 63 IPR009057 -
Mal1g4880 297 CDD SANT 11 58 IPR001005 -
Mal1g4880 297 MobiDBLite consensus disorder prediction 70 85 - -
Mal1g4880 297 ProSiteProfiles SANT domain profile. 124 172 IPR017884 -
Mal1g4880 297 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Mal1g4880 297 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Mal1g4880 297 Gene3D - 10 57 - -
Mal1g4880 297 MobiDBLite consensus disorder prediction 90 120 - -
Mal1g4880 297 CDD SANT 123 168 IPR001005 -
Mal1g4880 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 172 IPR017930 -
Mal1g4880 297 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Mal1g4880 297 SMART sant 8 60 IPR001005 -
Mal1g4880 297 SMART sant 120 170 IPR001005 -
Mal1g4880 297 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 285 - -
Mal1g4880 297 PANTHER TRANSCRIPTION FACTOR KUA1 7 285 - -
Mal1g4880 297 MobiDBLite consensus disorder prediction 187 218 - -
Mal1g4880 297 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Mal1g4880 297 Gene3D - 122 174 - -
Mal1g4880 297 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Mal1g4880 297 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 170 IPR006447 GO:0003677
Mal1g4880 297 MobiDBLite consensus disorder prediction 68 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4880 Mal-Chr1 117328069 117332452 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g4880 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4880 - - ccaj:109792793 504.597