Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4842 ATGCCTCGTCCTTCTTTCCAAAAGCTCATTCTTCAACCAACCCTTCAATCTAGGCAATTGAGGATTCCGGATGATTTTATGAGGAAACATGGGGCCCAGCTTTCGACTATTGCAACTCTCAAAGTTCCTGATGGCACTGTCTGGCGTCTAGGATTGAAAAACGTCGACAATCATATTTGTTTTGTTGATGGCTGGCAAGATTTTGTTCAGAGGTACTCCATTAGCATTGGATACTTCCTTGTATTCACATACGAAGGAAATTCAAATTTCATCGTTCATATCTTTAATATGAGTGCTGCTGAGTTGAACTATCGATCAGCCACGAGTAGCCGGACCGAAGGGGCTTGCCATGGAAATTATCATCCTATTTTTCAAGACATTGAAGATATTGACTCGGATTCGCCACCTTCAAACTTTACTCCTGGGGCATTACAGGACAAGGTTTTTGCTGGATCTATGGATCAACTGACACCAGCGAAGAATAATATCCAACTTAGACACGAAAATAATGATGCCAAGAAAACTTCAAGAAGGAAACGGAAATCAGATCTGAGTGCACCGGAAACATCTGCTGAAAATGATGAGGAGGCAGAGCGCAATCGTTCGTATGAAAGTGCGTCTGCAAGAATAAGAAGAAATTTGGATAATGGAGAAAGAGAAAGGGTATTGAATGAGTCAGAAGCATTTGAATCAACTCTTCCGAACTGTCGAGTTATCCTGCGAGCCTCCTATTTATATAGGGGATGCATAATGTATTTCCCTTCCAGCTTTGCAGCAAATTTGAGCGATGTTTCAGATTCTATTAAGCTTCAGACATCCGATGGTGGGAAACAGTGGCCTGTTCGCTGCCTTTATAAAGAAGGCCGGGCAAAACTAAGCCAAGGATGGTACGAGTTTGCACTCGAGAATAATTTAGGAGAAGGAGATGTCTGTGTTTTTGAGCGGCTTAAAACCAGTAAGGCAGTGCTGCAAGTTACTTTGTTTTGTCTAAAAGAGGATTAA 1002 0.4192 MPRPSFQKLILQPTLQSRQLRIPDDFMRKHGAQLSTIATLKVPDGTVWRLGLKNVDNHICFVDGWQDFVQRYSISIGYFLVFTYEGNSNFIVHIFNMSAAELNYRSATSSRTEGACHGNYHPIFQDIEDIDSDSPPSNFTPGALQDKVFAGSMDQLTPAKNNIQLRHENNDAKKTSRRKRKSDLSAPETSAENDEEAERNRSYESASARIRRNLDNGERERVLNESEAFESTLPNCRVILRASYLYRGCIMYFPSSFAANLSDVSDSIKLQTSDGGKQWPVRCLYKEGRAKLSQGWYEFALENNLGEGDVCVFERLKTSKAVLQVTLFCLKED* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4842 333 Gene3D - 214 332 IPR015300 -
Mal1g4842 333 SMART B3_2 236 331 IPR003340 GO:0003677
Mal1g4842 333 SMART B3_2 6 98 IPR003340 GO:0003677
Mal1g4842 333 PANTHER B3 DOMAIN-CONTAINING 191 333 - -
Mal1g4842 333 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Mal1g4842 333 Gene3D - 1 99 IPR015300 -
Mal1g4842 333 Pfam B3 DNA binding domain 239 328 IPR003340 GO:0003677
Mal1g4842 333 Pfam B3 DNA binding domain 12 96 IPR003340 GO:0003677
Mal1g4842 333 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Mal1g4842 333 MobiDBLite consensus disorder prediction 166 206 - -
Mal1g4842 333 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 191 333 - -
Mal1g4842 333 SUPERFAMILY DNA-binding pseudobarrel domain 229 330 IPR015300 -
Mal1g4842 333 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 169 - -
Mal1g4842 333 CDD B3_DNA 234 329 IPR003340 GO:0003677
Mal1g4842 333 ProSiteProfiles B3 DNA-binding domain profile. 236 331 IPR003340 GO:0003677
Mal1g4842 333 CDD B3_DNA 4 96 IPR003340 GO:0003677
Mal1g4842 333 PANTHER B3 DOMAIN-CONTAINING 1 169 - -
Mal1g4842 333 MobiDBLite consensus disorder prediction 159 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4842 Mal-Chr1 116585330 116588316 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4842 1 328 B3 DNA Binding Superfamily AT3G18990 50.442 8.74e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g4842 B3 2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4842 - - gmx:100806715 390.963