Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4837 ATGCCTCGTCCTTCTTTTCACAAGCTTATTCTCCCAACAACCCTTCAATCTAGACAATTGAGGATTCCGGATAATTTTCTGAGGAAATATGGGGCCCAGCTTTCGACTATCGCAACCCTTACTGTTCCTGATGGCACCGTCTGGCGTCTAGGATTGAAAAAGGTCGACAACCGAATTTGGTTTGTCGATGGCTGGCAAGATTTTGTTCAACGTTACTCCATTGGCATTGGATACTTTCTAGTATTCACGTACGAAGGAAATTCAAATTTCATTGTTCATGTCTTTAATATGAGTACCGCCGAGTTAAACTATCAATCAGCCATGAGAAGCCGTACCGAAGGGCCTTGCTATGCAAATTATCATCCTATTTTTGAAGACATTGAAGATATCGACTCCTTTGAATTCCTGGACTCGTCACCCTCAAATCTTACTCCTGGTTCATTGCAAGACAAGGTTTTTACTGGATCTATGGATCAACTGACACCAGCGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGGGGGTCTAAACTGAACCGCGTTAACTGGGGAGATATCGGTGGTGCTCTTTCTTCAAAGGGTGCCATTCAGTCAACCAGAGATATAGGTGTTCAGTTCAATGCTAATGAGTTTAAAAAGTCCACTGAAGGATTGAAATTGCGCTATGAGGAAGGGGTTAACAATACTGATACTAAGAAAACTCCAAGAAAGAAGCGGAAATCAGATCCAAGTGCACAGGAAGCCTCTGCTGAAAATGATGAGGAGGCAGAGCGCTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAACGAGTCAAAGACATTTGAACCAACTAATCCTTTCTGTCGAGTTGTTCTGCGACCCTCCTATTTATATAGGGGATGTATAATGTATCTGCCTTCCTGCTTTGCAGAAAAGAATTTGAACGGTGTTTCAGGATTCATTAAGCTTCAGATCTCCGATGGGCGACAGTGGCCTGTTCGCTGCCTTTATAAAGGAGGCCGGGCAAAGTTAAGCCAAGGATGGTATGAGTTTACATTGGAGAACAATTTAGGGGAAGGCGATATCTGTGTTTTTGAGCTGCTTAGAACCAGAGAGGTAGTGCTGCAAGTTACTTTGTTTCGTGTAAAAGAGGATGAATCAGGGTTATTCAACCCTTCTACACAGCCAAGCCAAAATGTGAGCCATGCAAAAATGTTGAACCCTCACTTGCAGCACCGTGTCAGCTCAACCAAATCAGCTAAGAATTAG 1293 0.4285 MPRPSFHKLILPTTLQSRQLRIPDNFLRKYGAQLSTIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFVQRYSIGIGYFLVFTYEGNSNFIVHVFNMSTAELNYQSAMRSRTEGPCYANYHPIFEDIEDIDSFEFLDSSPSNLTPGSLQDKVFTGSMDQLTPAKNHTPSLQNLFNGGSKLNRVNWGDIGGALSSKGAIQSTRDIGVQFNANEFKKSTEGLKLRYEEGVNNTDTKKTPRKKRKSDPSAQEASAENDEEAERYRFYESASARKRTVTAEERERAINESKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKGGRAKLSQGWYEFTLENNLGEGDICVFELLRTREVVLQVTLFRVKEDESGLFNPSTQPSQNVSHAKMLNPHLQHRVSSTKSAKN* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4837 430 MobiDBLite consensus disorder prediction 224 259 - -
Mal1g4837 430 SMART B3_2 296 391 IPR003340 GO:0003677
Mal1g4837 430 SMART B3_2 6 98 IPR003340 GO:0003677
Mal1g4837 430 Coils Coil 247 267 - -
Mal1g4837 430 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 421 - -
Mal1g4837 430 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Mal1g4837 430 CDD B3_DNA 294 389 IPR003340 GO:0003677
Mal1g4837 430 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Mal1g4837 430 Pfam B3 DNA binding domain 11 96 IPR003340 GO:0003677
Mal1g4837 430 Gene3D - 273 393 IPR015300 -
Mal1g4837 430 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Mal1g4837 430 Gene3D - 1 99 IPR015300 -
Mal1g4837 430 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Mal1g4837 430 PANTHER B3 DOMAIN-CONTAINING 1 421 - -
Mal1g4837 430 CDD B3_DNA 4 96 IPR003340 GO:0003677
Mal1g4837 430 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4837 Mal-Chr1 116540856 116545501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4837 1 392 B3 DNA Binding Superfamily AT3G18990 51.654 4.14e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g4837 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4837 - - gmx:100789352 675.241