Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4789 ATGGCTGCATCTTCATCATCTACACCTTTCTTGGAAATTAGACAAGAAAATCAAAGTCAGATTACACAACAACATCAATCTTCCACAGATGCTTCATCCACTGCTGCTCAACCTTTAGTGCCTCAGAAAAAAAGAAGGAATCAACCTGGAACACCATATCCAGATGCAGAAGTGATAGCACTATCTCCAAAGACTCTAATGGCAACAAATAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTCCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAGCCAACATGTGTTCACCATGACCCTTCAAGAGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGATAGTTTCATCACACATAGGGCCTTTTGTGATGCATTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTAGCAACTCATCTATTTTCCACAAACCACATGAGTTTAGGTCTTTCCCAACAAGGAAACACAAACAATAACATCTTAAGCCTAGGTAATATTCCTTGTACACCAAAATTTGAACATCATTTAATCTCACCTTTACATCCATCATCATCATCATTTGGTCAACAACAACAACAATCACCACAACAACAATCAATGTCTTCCTCACCTTTCTTCCTCAATGATCCAAATCAAACTTTCCAACAAGACCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCGGATCTTCAAGGAAATACCAATAACAACGCGAATTCTTCATCGGTATCGCCTTTTAACCTAAGTTTCTTTCCAAATACCAATAATAGCACAATGCATGATCAATTCAACAACATAAGTGAAGCTCATCATCATCATCATGATCATCACCATGAAGGTTTTTCTTCACTCTTTAGTAATTCATCAATGCAACAAGAGAACGTGTTATCATCACCTCACATGTCAGCAACTGCATTACTTCAAAAAGCTGCTCAAATAGGTTCAACAACAACAACTATCAATAACAATGGTGTAGAATCTAATGAACACAATCAACATCTACATGGTTTGATGAACTCTCTTGGGAATGGAAACACTTCAATATATGGAAATATGAATCATGATGATAACAGCCTTGGTCAGTTTCAAAATGTTGAGGAGATTAAAAAGATGTCATCACAACAAAACCTAGTGGGTAATTTGTGCTTTGGAGGATCAGATAAGTTGACTTTGGATTTTCTTGGTGTTGGAGGAAGGGTGAGAAACATGAATAGCACTAGTAGTGGTGCATTTTCACAAAGAGATCAACAACTTCACTCAATGAGTGCAATGAACAATATGGATCCTAAAATGGAATCAACACAAGCAAACCAACCTTTTTGA 1584 0.3782 MAASSSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQQGNTNNNILSLGNIPCTPKFEHHLISPLHPSSSSFGQQQQQSPQQQSMSSSPFFLNDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNANSSSVSPFNLSFFPNTNNSTMHDQFNNISEAHHHHHDHHHEGFSSLFSNSSMQQENVLSSPHMSATALLQKAAQIGSTTTTINNNGVESNEHNQHLHGLMNSLGNGNTSIYGNMNHDDNSLGQFQNVEEIKKMSSQQNLVGNLCFGGSDKLTLDFLGVGGRVRNMNSTSSGAFSQRDQQLHSMSAMNNMDPKMESTQANQPF* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4789 527 Gene3D Classic Zinc Finger 126 205 - -
Mal1g4789 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 412 501 - -
Mal1g4789 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 406 - -
Mal1g4789 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Mal1g4789 527 MobiDBLite consensus disorder prediction 1 41 - -
Mal1g4789 527 Gene3D Classic Zinc Finger 55 120 - -
Mal1g4789 527 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Mal1g4789 527 SMART c2h2final6 148 168 IPR013087 -
Mal1g4789 527 SMART c2h2final6 72 94 IPR013087 -
Mal1g4789 527 SMART c2h2final6 113 143 IPR013087 -
Mal1g4789 527 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 412 501 - -
Mal1g4789 527 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 406 - -
Mal1g4789 527 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Mal1g4789 527 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Mal1g4789 527 MobiDBLite consensus disorder prediction 1 55 - -
Mal1g4789 527 MobiDBLite consensus disorder prediction 256 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4789 Mal-Chr1 115294747 115299449 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4789 42 498 IDZ Gene Family AT2G02070 45.283 2.26e-120 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g4789 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4789 K25870 - gmx:100806198 630.557