Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4788 ATGAAACCCGAGTTATACGAAATCTCCGACGATGAATGGGAAAATCACTCATTCAAACCCTCACGCGTTTTAAAACGACCTCGTTCTCCTCCTCCGCCTCTCGAATCCTTCGCTTATAAACCACCACCACCTCCTCCTTCTGTAACCGTTTCCGACGACGACGATTGCGTTGAAATTACGGAAAATACCGATAATATCCTCGATGAATTGGACGATGCTGAATGTGAAGCGGCGGCTGCTGCTCCGGCGGCGAGGTCTGGACGGAGGTTTGTAATTGATGATGAGGATGAGGAGGAGGATGGCGGAGGTATTGGCGGTGGTGGTGGTGTGGATTTGTATGAGATTGATTCTACGGAAGATGAAATTGAGGAAGCGGTTCATGAAGGGGATTTGGTTGGTAGGGCTTTGCAAAAGTGTGCGAGGATTTCAGTTGAGTTGAAAGGAGAGTTGTTTGGTTCTTCTGGTGCTGTTTGTGAGAGGTATTCGGAAGTTGAATCTTCTTCTGTTAGAATTGTTACTCAGGATGATGTTGATTTTGCGTGTGGGTCGGAGGATTCGGATTTTCAACCGTTGTTAAAGCCGTATCAACTTGTTGGTGTTAATTTCTTGCTGTTGTTGTATCGTAAGAGGATTGGAGGAGCCATATTGGCAGATGAAATGGGGCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAATGATTCTGGTCCACATCTTATAGTCTGTCCTGCCTCTGTATTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCATTTTCTGTTCTTCAATATCACGGGTCTGCACGCGCAGCATACTGCAAGGAGTTGAATTCCTTGTCCAAGTCAGGATTGCCTCCCCCATTTAATGTTCTTCTCGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGTAAAATCTTGAAGCGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGCAATGCGAACCAGCGCTTGATGCTGACAGGAACTCCACTTCAAAATGATCTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTACTAAGTGCAGAAGATAAAGATTTAACTAGTCGTATGAAGTCTATATTAGGACCATTTATTTTGCGGCGCCTGAAATCTGATGTGATGCAGCAACTTGTTCAAAAAACACAGAAGGTTGAATATGTCATAATGGAAAAGCAACAGGAACATGCTTACAAGGAAGCCATCGAGGAGTATCGTGCTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACTCAAAAAATGTTCTTGAAGTTCTACCTCGACGGCAAATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCGAACCATCCCTTGTTGATAAGGAGAATTTATAATGATGAGGATGTTGTTCGCTTTGCGAGGAAGCTACATCCAATAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATGGAGGAGCTTAAAAGTTACAACGACTTCTCCATTCACCGGCTTTTACTTCATTATGATATCAATGATAGAAAGGGGATCCTTTCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCTTTAGCAGAGCTTCTTCCATCACTAAAGAAGAGTGGTCATCGTGTATTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGGCAAACAATAGTCGACACATTCAATAATGATACTTCAATTTTTGCATGCTTGCTTTCCACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACAGTTGTTATTCATGACATGGATTTTAATCCACAGATTGATAGACAAGCAGAAGATCGCTGCCATCGAATTGGTCAAACAAAGCCTGTAACTATATACAGGCTGGTGGCAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAGTCCATGGAAGATATCAAAGAAGGGGACATGCCTGAGAAGACCATGGGAGAGATATTGTCTGCAATTTTGTTAAACTATTGA 2229 0.4226 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLESFAYKPPPPPPSVTVSDDDDCVEITENTDNILDELDDAECEAAAAAPAARSGRRFVIDDEDEEEDGGGIGGGGGVDLYEIDSTEDEIEEAVHEGDLVGRALQKCARISVELKGELFGSSGAVCERYSEVESSSVRIVTQDDVDFACGSEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGSARAAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDKDLTSRMKSILGPFILRRLKSDVMQQLVQKTQKVEYVIMEKQQEHAYKEAIEEYRAVSQARLTKCSDLNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLHPIGAFGFECTLDRVMEELKSYNDFSIHRLLLHYDINDRKGILSDKHVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVAKGTVDENVYEIAKRKLGLDAAVLESMEDIKEGDMPEKTMGEILSAILLNY* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4788 742 Gene3D - 548 736 IPR027417 -
Mal1g4788 742 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 383 IPR014001 -
Mal1g4788 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 418 IPR027417 -
Mal1g4788 742 MobiDBLite consensus disorder prediction 25 49 - -
Mal1g4788 742 Pfam Helicase conserved C-terminal domain 568 680 IPR001650 -
Mal1g4788 742 SMART ultradead3 188 393 IPR014001 -
Mal1g4788 742 CDD DEXHc_Snf 192 385 - -
Mal1g4788 742 Coils Coil 56 76 - -
Mal1g4788 742 PANTHER SNF2/RAD54 HELICASE FAMILY 125 739 - -
Mal1g4788 742 CDD SF2_C_SNF 558 691 - -
Mal1g4788 742 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 125 739 - -
Mal1g4788 742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 722 IPR001650 -
Mal1g4788 742 MobiDBLite consensus disorder prediction 19 53 - -
Mal1g4788 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 324 722 IPR027417 -
Mal1g4788 742 Pfam SNF2-related domain 210 498 IPR000330 GO:0005524|GO:0140658
Mal1g4788 742 MobiDBLite consensus disorder prediction 86 110 - -
Mal1g4788 742 SMART helicmild6 597 680 IPR001650 -
Mal1g4788 742 Gene3D - 176 443 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4788 Mal-Chr1 115233871 115244266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4788 190 720 RAD5 or RAD16-like Gene Family AT1G02670 26.516 9.37e-39 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g4788 SNF2_N 1.3e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4788 K14439 - gmx:100806323 1215.29