LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal1g4780	ATGACTAGTTTCTCTGCTTCTACTGTTCGTTTCTTTCGAATTATTACCACAAAAGTTCTTCAAGATGGAAAACTTATGATTCCAAATGGTTTCACTAAGAACCATATGAGTGACATGTCAAACCCAATGTTTCTCAAGACTCCAGATGGTAAAAAATGGGAAATATGTGCAACTAAAATTAATGGGGATTTATGGTTTCAAAAGGGTTGGAATGAATTTGCTACATATTATTCAATAGATCATGGGCACATGTTATTGTTTCAATATGAAGAAAACTCTCATTTTCTGGTGCATATATTTGGCAAGAGTACCCTTGAAATTGAATATCCTTTCAATGACAATCAACATGAACAAAGGAATTTTGACCAAATTAGTGATGACGACTCGGTTGAAATTTTCGATAAGCGACCTTCACGCAAGAAGAAGATTAGATCAAAATCACCAATTATGTGTCCACAACCACATAAGAAATTGAGAATTGCTATGTTATTCCAACATGAAATCAGGACAGTTTTCAAGAGGTTGGAACCAATTTTGGGAAGAAAATAA	549	0.3388	MTSFSASTVRFFRIITTKVLQDGKLMIPNGFTKNHMSDMSNPMFLKTPDGKKWEICATKINGDLWFQKGWNEFATYYSIDHGHMLLFQYEENSHFLVHIFGKSTLEIEYPFNDNQHEQRNFDQISDDDSVEIFDKRPSRKKKIRSKSPIMCPQPHKKLRIAMLFQHEIRTVFKRLEPILGRK*	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal1g4780	182	ProSiteProfiles	B3 DNA-binding domain profile.	10	103	IPR003340	GO:0003677
	Mal1g4780	182	PANTHER	B3 DOMAIN-CONTAINING	3	159	-	-
	Mal1g4780	182	SMART	B3_2	11	103	IPR003340	GO:0003677
	Mal1g4780	182	CDD	B3_DNA	10	100	IPR003340	GO:0003677
	Mal1g4780	182	SUPERFAMILY	DNA-binding pseudobarrel domain	5	103	IPR015300	-
	Mal1g4780	182	PANTHER	TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED	3	159	-	-
	Mal1g4780	182	Gene3D	-	4	104	IPR015300	-
	Mal1g4780	182	Pfam	B3 DNA binding domain	15	102	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal1g4780	Mal-Chr1	115101435	115103619	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal1g4780	10	144	B3 DNA Binding Superfamily	AT4G01580	39.568	8.02e-24	91.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Mal1g4780		B3	2.5e-13	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal1g4780	-		-	mtr:MTR_1g035460	239.965