Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4779 ATGATGTCCAGTGTTCACCATGGGCGTGGGAGTGAAGCTAAGGGAATGCATTTCTATCAAACTATTCAACTTCGCGAGTTGCAACACCATGAGCTAATGATTCCTAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGATTTCCAAATGAGTCTGAGTGCAAAATGTTTTGGGTACAACGTGGTGATGATATTTGGTTAATGAATTGGAAAAGATTTGCACGTTCGCTTAGATGTGGAGATCTTTTAGTTTTCCAATATCAAGGAGGGTCAGATTTTCATGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGAGATGCAACGATGGCCAAGATTCTAACGAGCATTGTAAACAAGAAGAAGAGAGTGATAATGATGATTGTGTTGAGATTCTTAATGATATTGCTACTGCTGCTGCTACACCTCAAGAGACAAACATTGACAAGAGAAAAATTAATATGAATTCAACCCAACAAAAAGTCTCAGGTACTAACAAAGGAGGCATGACTACGAAGGCTAAGAGATCTTCAATAACTGAAGCAGTTAATGTGAAATCCAATAATAAGAATCCTATTTTTGAACTAAAATTGACACAATCTTATGTCCATGGTCATTCATTTTGGATACCAACCAAGTTTTCAAGAGAATACTTGAACGAGTTTGAAGGGATTGCAAGGATAAAGGTTGGTGAGGATAGAACTTGGAAGGTAAATGTGAAGTTTGATTATGTAAAAAGAAGTTCTGTTGTGAGCGCTGGTTGGAGTTTATTTACCAAGGAAAATAACTTGCAAATTGGTGATGTGTGTAAGTTTGAGATGACTCAATCCAAGCCACTTTTATTTGATATTTCTATTTCCCGAGTTAGAGAGGAACCAAGCCCTAACAAATTGCAAGGATATAAAAAAAGGATCTCTTCTACTGATTCAGAAGGTTCTAATGTGAGGAAACTTAAGACATTTGAGCTTCTCGAGAATTCCTCATACCCGTTTGAACCTGATGATTTTTTTGAGTAA 1047 0.3582 MMSSVHHGRGSEAKGMHFYQTIQLRELQHHELMIPRNFVERYWKDVSNPISLRFPNESECKMFWVQRGDDIWLMNWKRFARSLRCGDLLVFQYQGGSDFHVIILDDSKLEIDYSSMRCNDGQDSNEHCKQEEESDNDDCVEILNDIATAAATPQETNIDKRKINMNSTQQKVSGTNKGGMTTKAKRSSITEAVNVKSNNKNPIFELKLTQSYVHGHSFWIPTKFSREYLNEFEGIARIKVGEDRTWKVNVKFDYVKRSSVVSAGWSLFTKENNLQIGDVCKFEMTQSKPLLFDISISRVREEPSPNKLQGYKKRISSTDSEGSNVRKLKTFELLENSSYPFEPDDFFE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4779 348 SMART B3_2 18 107 IPR003340 GO:0003677
Mal1g4779 348 SMART B3_2 204 300 IPR003340 GO:0003677
Mal1g4779 348 ProSiteProfiles B3 DNA-binding domain profile. 203 300 IPR003340 GO:0003677
Mal1g4779 348 CDD B3_DNA 29 105 IPR003340 GO:0003677
Mal1g4779 348 Gene3D - 180 302 IPR015300 -
Mal1g4779 348 PANTHER B3 DOMAIN-CONTAINING 9 299 - -
Mal1g4779 348 CDD B3_DNA 202 298 IPR003340 GO:0003677
Mal1g4779 348 Gene3D - 10 108 IPR015300 -
Mal1g4779 348 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 299 - -
Mal1g4779 348 SUPERFAMILY DNA-binding pseudobarrel domain 197 294 IPR015300 -
Mal1g4779 348 SUPERFAMILY DNA-binding pseudobarrel domain 17 105 IPR015300 -
Mal1g4779 348 Pfam B3 DNA binding domain 204 291 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4779 Mal-Chr1 115065502 115068504 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4779 18 299 B3 DNA Binding Superfamily AT3G18990 23.739 1.19e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g4779 B3 5.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4779 - - mtr:MTR_6g061070 357.451