Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4777 ATGTGTGCCTTGCAAATCATGAGAATTTACTTCAACTTTGCAGGTACTAACAAAGGAGGCATGACTAAGAAGGCTAAAAGATATTCAATAACTGATGCCATTAACGAGAAATCCAATAATGAGAATCCAAGTTTTGAACTTAAATTGACAAAAACTTATGCCGAAAGCGGTTCATTTAGGATGCCAACTTTGTTTTATAGAGAATACTTGAACGAGTTCGAAGGGACCGCAAGTATAAGTGTTGGTAATGATAGAACTTGGAAGGTGAATGTGAGATTTGATTATGCAAGTAGAAGTTGTGTTGTGAACACTGGTTGGAAATTATTTACCAAGGAAAATAATTTGCAAGTTGGTGATGTGTGTAAGTTTGAGATGACTCAATCCGAGCCACCTTCATTTAATATTTCTATTTCCCGAGCTATAGAGGAACAAAGTCCTAGCAAGTTGCAAGGTTATAACAAAGGAACATCTTCTCCAGGTTCTAATTTGATGAAACAAAACATATATGAGGTTTTTGGGAATTCCTCATACCCGGTATGA 540 0.3611 MCALQIMRIYFNFAGTNKGGMTKKAKRYSITDAINEKSNNENPSFELKLTKTYAESGSFRMPTLFYREYLNEFEGTASISVGNDRTWKVNVRFDYASRSCVVNTGWKLFTKENNLQVGDVCKFEMTQSEPPSFNISISRAIEEQSPSKLQGYNKGTSSPGSNLMKQNIYEVFGNSSYPV* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4777 179 SUPERFAMILY DNA-binding pseudobarrel domain 40 142 IPR015300 -
Mal1g4777 179 Pfam B3 DNA binding domain 48 139 IPR003340 GO:0003677
Mal1g4777 179 ProSiteProfiles B3 DNA-binding domain profile. 44 141 IPR003340 GO:0003677
Mal1g4777 179 Gene3D - 21 143 IPR015300 -
Mal1g4777 179 SMART B3_2 45 141 IPR003340 GO:0003677
Mal1g4777 179 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 17 140 - -
Mal1g4777 179 CDD B3_DNA 43 139 IPR003340 GO:0003677
Mal1g4777 179 PANTHER B3 DOMAIN-CONTAINING 17 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4777 Mal-Chr1 115061174 115061915 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4777 25 128 REM Transcription Factor Family AT1G49480 29.464 2.07e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g4777 B3 9.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4777 - - mtr:MTR_1g035640 140.969