Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4772 ATGTTCTTGCAGATGATTCCGAGGAATTTCGTAGAGAGATATTGGAAAGATGTATTAAATCCAATATCCCTTAGACTTCCAAATGGGTCTGCATGCAAAATGAATTGGGTGCAACACGGTGATGATATTTGGCTTCAAAATTGGAAGAGGTTTGCACGGTCTCTCAGATGTGGAGATCTTTTAGTTTTTCAATACAAAGGAGGTTCAGATTTTCATGTCATTATATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATGACATGCAATGACGGTCAAGAAAATACTAAAGAGAGTGATGATGATGATGAGATTCCCAGTGACAATGAATATACTAAAATCCCCCTCAAGAAAAAGAGAATCAACTCAAGTGACATTGCTACTACTGCTGCTACACGTCAAGGGACAAACATTGACAAGAGAAAAATTAATATGAATGCAACCCAACAAAAAGTTTCAGGAAATTTTCAAAGTTTTGCAGAGGCTAATAGAAACAGAGAAGGCAGGGAGAAATGCACAAAAACTAAAGATGGGAATGAGAGAAGTTGCCCAAATTCCCATCCCAATGAGAATCCTAGTTTCACTATGAAATTATCGCGATATCATGTTGAAGGTGATAGTAGATTGGGGATACCTAGTTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACGATTAGAAGTGTTGGTGAGGAGGACAGGACATGGTATGTGACGTTAAAATTTGATGAATCCAAACGAAATTTTCGAATAGGTGGTTGGACGTCACATTCACAGGAACTTAACTTGCAAGTCGGTGATGTGTGTATATTTGAGATGACTCGACGCAAACCACTTTCATTCACAATTACTGTTATCGCAGCCACAAAGGAACCAGGCCGGAGCAGTTTCAAGAAAACCAAGGAGTCCAAGAAAAATCAGAGACAACACCTGTAA 951 0.3817 MFLQMIPRNFVERYWKDVLNPISLRLPNGSACKMNWVQHGDDIWLQNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSKLEIDYSSMTCNDGQENTKESDDDDEIPSDNEYTKIPLKKKRINSSDIATTAATRQGTNIDKRKINMNATQQKVSGNFQSFAEANRNREGREKCTKTKDGNERSCPNSHPNENPSFTMKLSRYHVEGDSRLGIPSWFSKEYMNELLQGKATIRSVGEEDRTWYVTLKFDESKRNFRIGGWTSHSQELNLQVGDVCIFEMTRRKPLSFTITVIAATKEPGRSSFKKTKESKKNQRQHL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4772 316 MobiDBLite consensus disorder prediction 164 192 - -
Mal1g4772 316 CDD B3_DNA 5 77 IPR003340 GO:0003677
Mal1g4772 316 SUPERFAMILY DNA-binding pseudobarrel domain 4 86 IPR015300 -
Mal1g4772 316 Gene3D - 173 295 IPR015300 -
Mal1g4772 316 SUPERFAMILY DNA-binding pseudobarrel domain 190 290 IPR015300 -
Mal1g4772 316 Pfam B3 DNA binding domain 197 291 IPR003340 GO:0003677
Mal1g4772 316 PANTHER B3 DOMAIN-CONTAINING 5 290 - -
Mal1g4772 316 MobiDBLite consensus disorder prediction 89 112 - -
Mal1g4772 316 SMART B3_2 195 294 IPR003340 GO:0003677
Mal1g4772 316 SMART B3_2 2 79 IPR003340 GO:0003677
Mal1g4772 316 MobiDBLite consensus disorder prediction 164 184 - -
Mal1g4772 316 Gene3D - 3 80 IPR015300 -
Mal1g4772 316 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 290 - -
Mal1g4772 316 ProSiteProfiles B3 DNA-binding domain profile. 195 294 IPR003340 GO:0003677
Mal1g4772 316 CDD B3_DNA 193 291 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4772 Mal-Chr1 114766983 114770488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4772 6 291 B3 DNA Binding Superfamily AT3G18990 24.458 3.39e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g4772 B3 3.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4772 - - mtr:MTR_6g061070 443.736