Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4771 ATGTCCAGTGTTCAACACTATGGGCGTGGAAGTGAAGCTAAGGGAATTCATTTCTACCAAACCATTCAACTTCGCCAGTTACAAGACAAAGAACTAATGATTCCAAGGAATTTCGTAGAGAGATATTGGAAAGATGTATCAAATCCAATTTCCCTTAGACTTCCAAATGGGTCTGCGTGCAAAATGAATTGGGTACAACGTGGTGATGATATTTGGCTTCAGAATTGGAAGAGGTTTGCACGGTCGCTTAGATGTGGAGATCTTTTAGTTTTTCAATACAAAGGAGGGTCAGATTTTCATGTCATTGTATTAGATGATAGTAAATTAGAAATTGACTATTCAAGTATCACATGCAACGACGATCAAGAAAATACTAAAGAGAGTGATGTTGATGATGATAATGATGATGATGATGATGATAATGAGTGTGTTGAGATTCCCAGTGACAGTGAAAATGCTAAAATCCCCCTCAAGAAAAAGAGAATCAACTTAAATGACATTGCTACTACTGCTGATACACCTCAAGAGACAAACATTGACAAGAGAAAAACTAATATCGATGCAACCCAACAAAAAGTTTCGGAGGATAATAGAAACAGAGGAGTCAAGGAGAAATGCACAAAAACTAAAGATGGGAATGAGAGAAGTTGCACTAATTCTCATTCCAATGAGAATCCTAGTTTCACTCTCAAATTATCGCCATATCATGTTGAAGGTGATAATAGATTGAGGATACCTAAATGGTTTTCAAAAGAATACACGAATGAGTTATTCCAAGGGAAGGCAACGATTAGAATTGTTGGTGAGGCCAGGCAATGGTTCGTGACGTTAAACTTCGAGAAAAGCAAGAGCATTTTTGTAATACAGGCTGGTTGGAAGTCATTTTCAAAGGAACATGGCTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCGACGCGAACCGCTTTCATTCACAATTACTATTATACCAGACACAAAGGAACCATGCCCAGAGCAGTTTCAAGGTTGTGGACATGCAGAAAACCAACGAGTCCAAGGAAAATCAGTGACAACGCCTGTAGAAGATATGGAATATGTGCGCAAATTTGGAGAAGGAATTTCAAACAGCTGCCCAAAAACACATGATTCCGTAAGTCCGAATTTACATGACGAATTCAAGGTTTTTGTAACATCATTAGACAAGCTGGTTGTATTACCGAGTCTGTTGAAGAGACGTAATATATTTAGTGGAGATTCAGTCGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTAGAGGTGAGTTATAATCAATATCTCGATTATGGATGGTTCACTAAAGGTTGGTCAGAATTTGTGAGAGACTGCAATGTGAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTTCACAATCATGTTTTCAAGGTTTCGATTATTCTAGATGTTTAG 1437 0.3786 MSSVQHYGRGSEAKGIHFYQTIQLRQLQDKELMIPRNFVERYWKDVSNPISLRLPNGSACKMNWVQRGDDIWLQNWKRFARSLRCGDLLVFQYKGGSDFHVIVLDDSKLEIDYSSITCNDDQENTKESDVDDDNDDDDDDNECVEIPSDSENAKIPLKKKRINLNDIATTADTPQETNIDKRKTNIDATQQKVSEDNRNRGVKEKCTKTKDGNERSCTNSHSNENPSFTLKLSPYHVEGDNRLRIPKWFSKEYTNELFQGKATIRIVGEARQWFVTLNFEKSKSIFVIQAGWKSFSKEHGLKVGDVCKFEMTRREPLSFTITIIPDTKEPCPEQFQGCGHAENQRVQGKSVTTPVEDMEYVRKFGEGISNSCPKTHDSVSPNLHDEFKVFVTSLDKLVVLPSLLKRRNIFSGDSVELKVGEGTWFVEVSYNQYLDYGWFTKGWSEFVRDCNVKIGDTCLFEMIDVHNHVFKVSIILDV* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4771 478 CDD B3_DNA 226 325 IPR003340 GO:0003677
Mal1g4771 478 CDD B3_DNA 412 475 IPR003340 GO:0003677
Mal1g4771 478 Gene3D - 380 477 IPR015300 -
Mal1g4771 478 Gene3D - 206 327 IPR015300 -
Mal1g4771 478 MobiDBLite consensus disorder prediction 176 217 - -
Mal1g4771 478 Gene3D - 11 108 IPR015300 -
Mal1g4771 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 10 323 - -
Mal1g4771 478 CDD B3_DNA 32 105 IPR003340 GO:0003677
Mal1g4771 478 SMART B3_2 228 327 IPR003340 GO:0003677
Mal1g4771 478 SMART B3_2 18 107 IPR003340 GO:0003677
Mal1g4771 478 SMART B3_2 386 473 IPR003340 GO:0003677
Mal1g4771 478 SUPERFAMILY DNA-binding pseudobarrel domain 223 323 IPR015300 -
Mal1g4771 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 413 475 - -
Mal1g4771 478 MobiDBLite consensus disorder prediction 173 225 - -
Mal1g4771 478 Pfam B3 DNA binding domain 228 324 IPR003340 GO:0003677
Mal1g4771 478 Pfam B3 DNA binding domain 415 473 IPR003340 GO:0003677
Mal1g4771 478 SUPERFAMILY DNA-binding pseudobarrel domain 395 474 IPR015300 -
Mal1g4771 478 PANTHER B3 DOMAIN-CONTAINING 413 475 - -
Mal1g4771 478 ProSiteProfiles B3 DNA-binding domain profile. 423 478 IPR003340 GO:0003677
Mal1g4771 478 MobiDBLite consensus disorder prediction 120 150 - -
Mal1g4771 478 ProSiteProfiles B3 DNA-binding domain profile. 228 327 IPR003340 GO:0003677
Mal1g4771 478 PANTHER B3 DOMAIN-CONTAINING 10 323 - -
Mal1g4771 478 MobiDBLite consensus disorder prediction 125 146 - -
Mal1g4771 478 SUPERFAMILY DNA-binding pseudobarrel domain 16 105 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4771 Mal-Chr1 114735398 114738904 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4771 18 322 B3 DNA Binding Superfamily AT3G18990 25.826 1.44e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g4771 B3 3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4771 - - mtr:MTR_6g061070 740.339