Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4717 ATGGATTTTGTAACCAAACAACACTTGGCCCATCATGTGATACAAGCTCTTCCACCTACCCAAAATCATCCTGATTCTGTTACAAATTTTCCAATCATAGTAATCATTGTAGTAGGAATGATGGCAACATCTTTATTGCTAATGGCCTACTACACCTTTGTGATCAAATGCTGCCTCAATTGGAACAATATTGATCTTGTTAGAGTAAGACGTTTTTCTTTTTCAAGGCAAGGTGAAGAACAATCTACATCATACTCAATGACATCAGATCATAGAGGACTAGACCAATCAATGATTAATTCAATTCCAATGATTCATTACAAAGAAGAGAAAGACTATGGTGAATTAGGAATCTCTAGTGAATGTGCTTTTTGTTTGAGTGAGTTTCAACAAGATGAGAAACTAAGAGTTATACCAAATTGCAACCATTTATTTCACATTGATTGTGTTGATATTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGAAGAGTTTCATTGACAAGAGAAATCCAAGTTGAGCATGTTGTCACTCCAAGACCTTCACCTTATTTCCAAAGCCAAAATGTTGAAAACATCATTGATAGTTGTGAAGATTTTGTTGTGATTGATTTGGATGATAATGAAAATGATCATGAAGGTCAAAACTTGCATGAAAGAAGAGAAGAAAGAGGTAAAGAATTGGAGGTACCAAGAGATTCACACAAGAAAGCAATTAAGCTTCAAAAAGTGACTAGCATGGGGGATGATTGTATTAAAGACAAAGATGATGGCTTCTTAGTTCAACCAATTAGAAGGTCTTTCTCAATGGACTTGGCAATACATAAATCTTTATATGAACATAATGTTCATGTTCATGAGATTAGTTCCATTGAAGTTTGTGGTGATAGTAGTAGTAGAGCTAAAAGATCATTCTTTTCCTTTGGACATGGAAGTAGATCAAGAAGTGCTGTTTTACCAATTCACTTGGACCCTTGA 984 0.3465 MDFVTKQHLAHHVIQALPPTQNHPDSVTNFPIIVIIVVGMMATSLLLMAYYTFVIKCCLNWNNIDLVRVRRFSFSRQGEEQSTSYSMTSDHRGLDQSMINSIPMIHYKEEKDYGELGISSECAFCLSEFQQDEKLRVIPNCNHLFHIDCVDIWLQNNANCPLCRRRVSLTREIQVEHVVTPRPSPYFQSQNVENIIDSCEDFVVIDLDDNENDHEGQNLHERREERGKELEVPRDSHKKAIKLQKVTSMGDDCIKDKDDGFLVQPIRRSFSMDLAIHKSLYEHNVHVHEISSIEVCGDSSSRAKRSFFSFGHGSRSRSAVLPIHLDP* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4717 327 SUPERFAMILY RING/U-box 98 172 - -
Mal1g4717 327 MobiDBLite consensus disorder prediction 210 234 - -
Mal1g4717 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 169 IPR013083 -
Mal1g4717 327 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Mal1g4717 327 PANTHER RING-H2 FINGER PROTEIN ATL16 17 326 IPR044600 GO:0016567|GO:0016740
Mal1g4717 327 PANTHER RING-H2 FINGER PROTEIN ATL16 17 326 - -
Mal1g4717 327 Pfam Ring finger domain 121 164 IPR001841 -
Mal1g4717 327 CDD RING-H2_PA-TM-RING 121 164 - -
Mal1g4717 327 SMART ring_2 122 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4717 Mal-Chr1 112519336 112520319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4717 26 327 C3H Transcription Factor Family AT1G04360 41.143 7.83e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4717 - - mtr:MTR_1g043410 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3827 3 116099438 116100385 Mal1g4717 1 112519336 112520319 PCT