Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4716 ATGGATTCTCTAGAGTTATTAGAAACCACCGATTCTTGGGACATTTTCGGTGATTACTTCATTGACCCATCTCCTCCCACCCATTTCCTCTGGTCCAATTCCAATCTAAGTGTGAGTTCGGAAATTGACATTCCAAGTGGTGCTGTTGTGTGTCAAGAAGAGAATGCAAGGAAGAGTGTGAGCACGGAAATTGACATTCCAAGTGGTGCTGTTGTGTGTCAAGAAGAGAATACCAGGAAGAGGGGCCGCGCTGAATCATGCTACAAGGCAGGAACAAAAGCTTGCCGTGAGAAATTGCGGAGGGAGAAACTCAATGAAAGGTTTTGTGATTTGAGCGCTGTTTTGGAACCCGGGAGACCTGTGAGAACAGATAAACCGGCTATACTTGACGATGCTATCAGAGTCTTGAGCCAACTTAAAACTGAAGCTCAGGAACTCAAAGAATCAAATGAAAAACTATTGGAGGAAATAAAATGTTTAAAGGCAGAGAAAAACGAACTCCGTGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGATTGTGAAACAATTGAAAAGTCTGCCTATTTCACCAGCAGGGTTTATGCCTCCTCCTCCTCCTCCTATGGCTGCTTATCCTGCAAGCGTGAACAAAATGGCTGTGTATCCAAACTATGGATATATCCCAATGTGGCATTATCTTCCTCAATCAGCTCGCGATACGTCCCAAGATCATGAGCTCAGGCCTCCTGCTGCATAG 741 0.4399 MDSLELLETTDSWDIFGDYFIDPSPPTHFLWSNSNLSVSSEIDIPSGAVVCQEENARKSVSTEIDIPSGAVVCQEENTRKRGRAESCYKAGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLSQLKTEAQELKESNEKLLEEIKCLKAEKNELREEKLVLKADKEKIVKQLKSLPISPAGFMPPPPPPMAAYPASVNKMAVYPNYGYIPMWHYLPQSARDTSQDHELRPPAA* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4716 246 Gene3D - 92 189 IPR036638 GO:0046983
Mal1g4716 246 Coils Coil 129 184 - -
Mal1g4716 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 139 IPR011598 GO:0046983
Mal1g4716 246 SMART finulus 94 145 IPR011598 GO:0046983
Mal1g4716 246 CDD bHLH_AtILR3_like 93 168 - -
Mal1g4716 246 PANTHER BHLH TRANSCRIPTION FACTOR 2 246 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Mal1g4716 246 Pfam Helix-loop-helix DNA-binding domain 92 139 IPR011598 GO:0046983
Mal1g4716 246 PANTHER TRANSCRIPTION FACTOR BHLH104 2 246 - -
Mal1g4716 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 94 162 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4716 Mal-Chr1 112510951 112515209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4716 68 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 66.667 2.33e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal1g4716 HLH 7.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4716 - - mtr:MTR_1g043430 405.601