Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4705 ATGGAAAACGACAATGTCGTTTTTAGAAACGGCAATCCCGTTCTCGTCGCTCAGCCTCTCACCGTCGTCCGTGCCCGAACCAGCACCGGCGGCGGCGCTCGTGTTCTCGCAACGCCACCAAATTCAAACCCTAACTCCGATGAGTCGTTCGATGCAGTCAAAAATTCAATCGTTAAAGTCAAAGACGAACCACAAGAATTTGAAGATGAAGCGAAATCTGTCACCGTCGCTTCTCATTCTCCGGCGGTGGCGGAGGTCAAGGCGGATCCCGATGAGCCACGTTCGATGCTCGCGTTCGATGATTTTTTGAAAGCTACGAACACGAAAGTTGCGTCTGTTGATGAATCGTTGAAATCAATGGAAGTTGAATCAACGATTCAAACGAAGATTGAAAGTAGTGATGTTGATGTGGTCTTCGAGACGCAAGAATCGGTAGATCAGTTGAAATCAATGGAAGAAGTTCCCAATCTCAATGTGGTTTGTGAGACACAGGAATCGGTTAAGGTTGAACCGGTTTTTGCAGAGAAGAAAACGGTTAGTGATGATGATGTGGAAGTGTTGAAGGTGGTGAAGGGGAAAGAAGCTGTGGGTGACGAAGTTAGGGTTTTGAAGGTGGTGAAGAAGGAGGCAGTGGAAGAGAAGAAAATTCCGATAGGGAAAGAAGCTGTTAGCGATGAAGTTAGGGTTTTGAAGGTGGTGAAGAAGGAGGCAGTTGAGGAGAAGAAGATTCCGATTCCGAATCTTGAGGATGGTGAGTTTCCTGTTGAGCCTGGATGGTCATTGCTTGGAAGGAAGATTGAGATTGCTACTTCTACTGCTAAAGGAGTGAGAAGATTGGTGGACAATGAGATTATTCATTTCGATTTCCCGAATCCAAATACATCTTATAAGTTTCAATGGATTGTTCGCGTTTCAACGAAGCGTTCTGGAGTGGTTGGGAGGCTGCCAATGGAATGGGCAAAATCTGTTATTCCTCTTGTGCAATCTGGAAATGTTAAGATTCGAGGCCGATGCATTGCTACGCCGTATAAGTTGGAAATGATGCAGGAAATAATGTTGTTAGTGAGTTTTTATGTTCATCAATCTGTATTCTCTGAGAGTGTTGATACCTCTTGGAGGCTAGAGGCTTGTGGTAACATTAATTCTTCAGCTTATCCACTCCTTACATTGTTAAAAATGCTAGACATTGAGCCTCATAGGAAGGCTGATTTCACCCCTGAGGAAATGAAGGCTCGGAAGCGGGTGCTTAAACTTGATTCAGATGAAGCTTCAGTAATTCCTGTCAATAAGCGAAGAAAAGGCGTCAGTGAGCCACTTCCACAGCCAAATGAGGATGAACAAGCTCTTTCGGAGTCAGCTTTGAATAAACTTATTGGAGCTGCTGAAGTCTTTGACCTAGAGGAGAAGGAAGCACCAAAGACCCTGATGTGTAGTCTAAAGCCTTACCAGAGTCAAGCTCTGTATTGGATGACAAAAATTGAGAAGGGAGCTGATGATGAAAATGCTGAGAGAAATCTACATCCTTGCTGGTCAGCCTACAATATATGCAATGGAAAGACAGTATATGTCAACATATTTACTGGGGAGGCAGCAAAGAAATTTCCGCAAGCAACACAGATGGCAAGAGGAGGAATCCTGGCAGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTCTGATTCTTAGTAATCCAGGCAGGTTGAAGTCAGAAGACGGTGGCGGAGAAAGCGTATATGACAATATTTTCTCAACAAAGAGGAGGAATGTTAATGCGTCGAATAATTTAGAGGGTGGCACTCTGATTGTTTGTCCCATGGCATTATTGGGTCAGTGGAAGGATGAGCTTGAAACACATTCAAAACCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGTAGAACCAGTAATTCTGATTTGTTGTTAGAGTATGATGTTGTCTTGACAACATATGGTGTCCTATCAGCTTCATATAAAAGTGAAGGAGAGAATAGCATCTACCACAGGGTCCAATGGTACAGAGTGGTGTTAGATGAAGCTCATCATATAAAAGCCAGTAAAAGCCAGGTTGCTCAGGCTGCTACTGCTCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAAGATCTATTCAGTCTCTTGTCTTTCCTGCGTGTTCAACCTTGGTGCAACTCGCAATGGTGGACTAAGTTGATTCAAAAGCCATATGAGAATGGAGACCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGTGACTTCTATGGTGCTCTCTTCCTGAGAGCTAAAGTCCAATTTGAGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTGAGACGGTGCTGCAACCACCCATTTTTGGTCATGTGTGGAAGTGATACTGCAAAATATGCAGACTTGAGCAGACTTGCAAGAAAATTCCTGGAGTCTCATACAGAATCATCTGAAATGTGCTGTGAAAGTGATGGACAGCAAAATGCAGAATTGAATAAACTTGCTAGTAGTTTCTTACAGAACTCTGCTTCTGCTTCAAACTCTATCCAATCTCGTGGATACATCGATGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTAGAATGCGCTATATGCATGGAATCACCGGATGATCCTGTTTTTACACCATGTGCACATCAGTTTTGCAGAGAATGTCTATTCAACTGTTGGGGCACCTCAATGGGTGGTAAGTGCCCAATCTGTCGTCAAATACTCAAGAAAGATGATCTTATTGTACTTCCATCAGAAAGCCCATTCAAGGTTGACATTGAGAACAATTTGACGGAGTCTTCAAAGGTTTCAAAGCTGTTTGATTTCTTGGAACATACTCAGAAATATTCTGATGAAAAAAGTATTGTTTTTAGTCAGTGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGGAGAGGAATAGCATTCTTAAGATTTGATGGAAAATTGACTCAGAAGCAAAGAGAAAAAGTTCTGAAAGAATTTAACGACACAAAAGAGAAAAGGGTTTTGTTGATGTCACTTAAAGCTGGTGGTGTGGGCCTGAACTTGACTGCAGCCTCGCATGTTTTTCTAATGGATCCATGGTGGAATCCTGCAGTAGAGGAGCAAGCAATAATGAGGATTCATCGTATTGGGCAAAAGCGAAGGGTTATTGTAAGAAGATTCATCGTGAAGGGCACAGTGGAAGATCGGTTGCAACAAGTGCAAGCTAAGAAACAGAAGATGATATCTGGTGCTCTCACTGATGATGAAGTTCGGACTTCCAGGATTCAAGACCTCAAAATGCTATTCTCATAG 3489 0.4285 MENDNVVFRNGNPVLVAQPLTVVRARTSTGGGARVLATPPNSNPNSDESFDAVKNSIVKVKDEPQEFEDEAKSVTVASHSPAVAEVKADPDEPRSMLAFDDFLKATNTKVASVDESLKSMEVESTIQTKIESSDVDVVFETQESVDQLKSMEEVPNLNVVCETQESVKVEPVFAEKKTVSDDDVEVLKVVKGKEAVGDEVRVLKVVKKEAVEEKKIPIGKEAVSDEVRVLKVVKKEAVEEKKIPIPNLEDGEFPVEPGWSLLGRKIEIATSTAKGVRRLVDNEIIHFDFPNPNTSYKFQWIVRVSTKRSGVVGRLPMEWAKSVIPLVQSGNVKIRGRCIATPYKLEMMQEIMLLVSFYVHQSVFSESVDTSWRLEACGNINSSAYPLLTLLKMLDIEPHRKADFTPEEMKARKRVLKLDSDEASVIPVNKRRKGVSEPLPQPNEDEQALSESALNKLIGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTKIEKGADDENAERNLHPCWSAYNICNGKTVYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNPGRLKSEDGGGESVYDNIFSTKRRNVNASNNLEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTSNSDLLLEYDVVLTTYGVLSASYKSEGENSIYHRVQWYRVVLDEAHHIKASKSQVAQAATALSSHCRWCLTGTPLQNSLEDLFSLLSFLRVQPWCNSQWWTKLIQKPYENGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYGALFLRAKVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMCGSDTAKYADLSRLARKFLESHTESSEMCCESDGQQNAELNKLASSFLQNSASASNSIQSRGYIDEVLGHIQKGETVECAICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQILKKDDLIVLPSESPFKVDIENNLTESSKVSKLFDFLEHTQKYSDEKSIVFSQWTSFFDLLENPLRRRGIAFLRFDGKLTQKQREKVLKEFNDTKEKRVLLMSLKAGGVGLNLTAASHVFLMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKGTVEDRLQQVQAKKQKMISGALTDDEVRTSRIQDLKMLFS* 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4705 1162 MobiDBLite consensus disorder prediction 34 49 - -
Mal1g4705 1162 CDD DEXDc_SHPRH-like 479 767 - -
Mal1g4705 1162 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 999 1158 IPR001650 -
Mal1g4705 1162 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 535 729 IPR014001 -
Mal1g4705 1162 Gene3D - 530 779 IPR038718 -
Mal1g4705 1162 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 411 1161 - -
Mal1g4705 1162 SMART ultradead3 475 737 IPR014001 -
Mal1g4705 1162 SMART ring_2 926 965 IPR001841 -
Mal1g4705 1162 Pfam SNF2-related domain 482 845 IPR000330 GO:0005524|GO:0140658
Mal1g4705 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 767 IPR027417 -
Mal1g4705 1162 ProSitePatterns Zinc finger RING-type signature. 941 950 IPR017907 -
Mal1g4705 1162 Gene3D - 975 1161 IPR027417 -
Mal1g4705 1162 ProSiteProfiles Zinc finger RING-type profile. 926 966 IPR001841 -
Mal1g4705 1162 CDD SF2_C_SNF 982 1120 - -
Mal1g4705 1162 Pfam HIRAN domain 271 353 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mal1g4705 1162 SMART helicmild6 1026 1109 IPR001650 -
Mal1g4705 1162 Pfam Helicase conserved C-terminal domain 996 1109 IPR001650 -
Mal1g4705 1162 PANTHER DNA REPAIR PROTEIN RAD5B 411 1161 - -
Mal1g4705 1162 SUPERFAMILY RING/U-box 919 972 - -
Mal1g4705 1162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 921 974 IPR013083 -
Mal1g4705 1162 Gene3D - 781 875 IPR027417 -
Mal1g4705 1162 MobiDBLite consensus disorder prediction 29 49 - -
Mal1g4705 1162 SMART HIRAN_2 262 359 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mal1g4705 1162 Pfam Zinc finger, C3HC4 type (RING finger) 924 968 - -
Mal1g4705 1162 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 780 1153 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4705 Mal-Chr1 112289105 112295269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4705 206 1161 RAD5 or RAD16-like Gene Family AT5G43530 58.993 0.0 1166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal1g4705 SNF2_N 9.5e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4705 K15505 - gmx:100806677 1472.6