Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4647 ATGAACTGCTCCATTTCCGGTGAGGTTCCGGATGATCCTGTGGTGTCTAAAAGCTCTGGGCTTTTGTTCGAGAAGCGATTAATCGAGAGACATATAGCGGATTATGGGAAGTGTCCAGTTACAGGAGAACCACTTACTCTGGACGACATTGTTCCAATCAAAACAGGCAAGATAGTGAAGCCTAGACCAGTGCAGGCAGCTAGCATCCCTGGCATGCTCGGAATGTTCCAAAATGAATGGGATGGGTTGATGCTATCTAATTTTGCATTGGAGCAGCAGTTGCATACAGCAAGGCAAGAGTTAAGTCATGCTCTATATCAGCATGATGCTGCTTGCCGCGTGATTGCAAGACTTAAAAAGGAACGCGACGAAGCTAGGTCTTTACTTGCACAGGCAGAAAGGCAGTTCCCTATTTCCGCACCAAATGCTGTGACAGCAAATGCCCCTGTTCATAGCAATGGGAAAAGAGCTGCTGATGACGAGGAGCTGGCACCTAATGCAAAGAAATTACAGCCTGGACATCCTGGAATATCTTCTAGTATAATTTCTGAGCTAACAGACTGCAATGCTGCTCTTTCCCAGCAGAGGAAAAGGCGACAGATTCCTGCGACTTTGGCTCCTGTTGATGCTCTAGAGACATATACCCAGATATCTAGTCATCCCTTAAACAAAACAAACAAACAAGGCATTATATCTCTTGATATCCTTTACTCTAAGGACTTGATTGCAACTGGAAATATTGATACAAATGCTGTTATTTTTGACCGTCCATCAGGACAAGTATTAGCTACACTCAGCGGTCACTCTAAAAAGGTAAACAGCGTGAAGTTTGTAGGTCAGGGCGAATCTATCATAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGCGTCGGGTGATGGCTATAACTGCAGACAAATCTTGAGGGATCATTCGGCTGAGGTGGAAGCTGTCACTGTCCATGCCACCAATAGTTACTTTGTGACTGCATCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCAGGGACTTGTCTGACTCAGGTTTCAGACTCTTCTGAAGGCTATACATCTGCAGCTTTTCATCCCGATGGTCTTATTCTTGGAACAGGCACTACAGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTTGCTACGTTTCCTGGACATGTGGGTCATGTAACTTCAATATCCTTTTCTGAGAATGGATACTACCTTGCGACTGCAGCTCATGATGGTGTAAAGCTTTGGGATCTACGCAAGTTGAAAAACTTCCGGAGTTTCGCCCCATATGACTCAGCAACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGCAGGCTCTGATGTAAGGATATTGCAAGTTGCAAATGTGAAATCTGAATGGAACTTGATCAAAACTTTTCCCGATTTATCTGGAACAGGGAAATCCACGTGTGTAAAGTTCGGCCAAGATTCAAAATACTTAGCAGTGGCATCAATGGACCGGAATCTTCGAATATTTGGCCAACCTGCTGAAGATATTCCTGACGAATCATAA 1575 0.4425 MNCSISGEVPDDPVVSKSSGLLFEKRLIERHIADYGKCPVTGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQFPISAPNAVTANAPVHSNGKRAADDEELAPNAKKLQPGHPGISSSIISELTDCNAALSQQRKRRQIPATLAPVDALETYTQISSHPLNKTNKQGIISLDILYSKDLIATGNIDTNAVIFDRPSGQVLATLSGHSKKVNSVKFVGQGESIITGSADKTVRLWQASGDGYNCRQILRDHSAEVEAVTVHATNSYFVTASLDGTWCFYELSSGTCLTQVSDSSEGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQANVATFPGHVGHVTSISFSENGYYLATAAHDGVKLWDLRKLKNFRSFAPYDSATPTNSVEFDHSGSYLAVAGSDVRILQVANVKSEWNLIKTFPDLSGTGKSTCVKFGQDSKYLAVASMDRNLRIFGQPAEDIPDES* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4647 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 393 433 IPR001680 GO:0005515
Mal1g4647 524 Pfam WD domain, G-beta repeat 359 383 IPR001680 GO:0005515
Mal1g4647 524 Pfam WD domain, G-beta repeat 389 424 IPR001680 GO:0005515
Mal1g4647 524 Pfam WD domain, G-beta repeat 485 513 IPR001680 GO:0005515
Mal1g4647 524 Pfam WD domain, G-beta repeat 259 296 IPR001680 GO:0005515
Mal1g4647 524 Gene3D - 205 515 IPR015943 GO:0005515
Mal1g4647 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Mal1g4647 524 SUPERFAMILY RING/U-box 1 53 - -
Mal1g4647 524 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Mal1g4647 524 Coils Coil 115 135 - -
Mal1g4647 524 Pfam Prp19/Pso4-like 66 131 IPR013915 -
Mal1g4647 524 ProSitePatterns Trp-Asp (WD) repeats signature. 370 384 IPR019775 -
Mal1g4647 524 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Mal1g4647 524 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 351 386 - -
Mal1g4647 524 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 519 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Mal1g4647 524 Pfam U-box domain 3 53 IPR003613 GO:0004842|GO:0016567
Mal1g4647 524 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Mal1g4647 524 CDD WD40 229 513 - -
Mal1g4647 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 297 IPR001680 GO:0005515
Mal1g4647 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 350 IPR001680 GO:0005515
Mal1g4647 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 351 392 IPR001680 GO:0005515
Mal1g4647 524 SUPERFAMILY WD40 repeat-like 226 513 IPR036322 GO:0005515
Mal1g4647 524 SMART WD40_4 473 514 IPR001680 GO:0005515
Mal1g4647 524 SMART WD40_4 258 297 IPR001680 GO:0005515
Mal1g4647 524 SMART WD40_4 386 424 IPR001680 GO:0005515
Mal1g4647 524 SMART WD40_4 344 383 IPR001680 GO:0005515
Mal1g4647 524 SMART WD40_4 215 255 IPR001680 GO:0005515
Mal1g4647 524 SMART WD40_4 427 466 IPR001680 GO:0005515
Mal1g4647 524 SMART WD40_4 302 341 IPR001680 GO:0005515
Mal1g4647 524 CDD RING-Ubox_PRP19 3 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4647 Mal-Chr1 109142183 109150863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4647 1 524 U-box Gene Family AT1G04510 73.674 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4647 K10599 - gmx:100527039 930.628