Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4625 ATGGCTGCTACTGCAGGCATGGCTTCATTGTTTTCATCTTCCATAAACACTGTCAAATGTCTACGTTCCAAAAACTCCTCATTGGAAACAACCTCAAACCGCATGTTTGTGTCTTTGATCTCACTATCCTCTGTGGAACCTTTGTGCATTGGTGCAACAGTTTCACACAAGTTATGGTTTCCTAGAATTTCTGTTGCTGTTTCACAGGAAGAGGTGGATGTGGCTGTTGATGATGAAGAGAAGGTTGTTGTAGAGGAGGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGTAGAAGAGAAGGAGAATGGAGGGGAAATTGTAGACACTAGGAATAAGCTTTATTTTGGTAATTTGCCTTATAGTGTTGATAGTGCACAACTTGCAGGATTAATTGAAGATTATGGCAGTGCTGAACTAATTGAGGTTCTTTATGACAGAGACACTGGAAAAAGTAGAGGCTTTGCATTTGTGACAATGAGTTGTGTTGAAGACTGTAATGCAGTAATAAAAAATCTTGATGGAAAAGAGTTCATGGGACGATTGTTGCGGGTGAATTTCTCCGACAAACCAAAACCAAAAGAACCATTGTACCCTGAAACTGAGTACAAGCTTTTTGTTGGGAACTTGTCTTGGACAGTAACTTCTGAGAGTCTTGCACAAGCCTTTCAAGAACATGGAACTGTTGTTGGAGCTAGGGTGTTATATGATGGCGAAACTGGAAAGGCTCGTGGCTATGGCTTTGTTTGCTATGCCAATAAATCGGAAATGGATGCCGCTCTTAAAATCATGAATAATGTGGAACTAGAAGGACGAACATTGCGCGTTTACTTGGCTCAAGGAAAACGTTCATAA 873 0.4021 MAATAGMASLFSSSINTVKCLRSKNSSLETTSNRMFVSLISLSSVEPLCIGATVSHKLWFPRISVAVSQEEVDVAVDDEEKVVVEEEEKEEEEEEEEEEEEEVVEEKENGGEIVDTRNKLYFGNLPYSVDSAQLAGLIEDYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIKNLDGKEFMGRLLRVNFSDKPKPKEPLYPETEYKLFVGNLSWTVTSESLAQAFQEHGTVVGARVLYDGETGKARGYGFVCYANKSEMDAALKIMNNVELEGRTLRVYLAQGKRS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4625 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 281 IPR000504 GO:0003723
Mal1g4625 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 189 IPR000504 GO:0003723
Mal1g4625 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Mal1g4625 290 MobiDBLite consensus disorder prediction 80 108 - -
Mal1g4625 290 SUPERFAMILY RNA-binding domain, RBD 112 200 IPR035979 GO:0003676
Mal1g4625 290 MobiDBLite consensus disorder prediction 80 109 - -
Mal1g4625 290 Gene3D - 65 199 IPR012677 -
Mal1g4625 290 SUPERFAMILY RNA-binding domain, RBD 204 289 IPR035979 GO:0003676
Mal1g4625 290 SMART rrm1_1 210 283 IPR000504 GO:0003723
Mal1g4625 290 SMART rrm1_1 119 192 IPR000504 GO:0003723
Mal1g4625 290 Coils Coil 75 110 - -
Mal1g4625 290 PANTHER OS02G0815200 PROTEIN 2 289 - -
Mal1g4625 290 Gene3D - 200 290 IPR012677 -
Mal1g4625 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Mal1g4625 290 PANTHER OS02G0815200 PROTEIN 2 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4625 Mal-Chr1 108451424 108453728 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4625 120 288 Eukaryotic Initiation Factors Gene Family AT3G16380 29.730 6.29e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4625 - - aprc:113871254 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g4625 1 108451424 108453728 Mal1g4625 1 108451424 108453728 ECH
Mal3g4479 3 124634391 124636152 Mal1g4625 1 108451424 108453728 PCT