Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4618 ATGTATTGGCGTGGAGTGATGACAGGCCAAATTGGTCATGGTATCATGGAGGAAGAGATATGGAGGAAAGGACCATGGACTGCTGAAGAGGATAAGTTGCTAATTGAGTATGTTAGGATGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGATTGAAAAGGAATGGAAAGAGTTGCAGATTGAGGTGGGTGAATTATCTAAGACCTGATCTCAAAAGGGGTCAAATAACACCACAAGAAGAGAGCATAATACTGGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTACCAGGAAGAACAGACAATGAAATAAAGAATTACTGGAGAACTCATTTCAAGAAAAAGGCGAAAAATCCCACTGATGCTGCCGAGAAGGCGAAAAACCGATTCCTAAGGAAACAACTATTTCATCAGCAGCAGCAGCAACAACAATTCCAACAACAGCAACAGCAACAACTACAATACAACTTAGACATGAAAGGTGTCATGTCCTTGTTTGAGGAAAACAATAACCATAAATCACTTCCTTATATATCTCAAACTAGACAAGAAATGTTCAACATGTGTCAAAATACAACAGAAGAACAAAGTTACTTTATGCTCAATGGTAACTCTTCTGTACCTGCTGCAACAGAAAATGATAATTTGTGGGATGGTTTGTGGAATTTGGATGATGTTCAAGGAAATTTCAGTGTTGCTAATGCAACAAACAAAACTGGTCTATACAATTTAGTTGCTCCTTACTGTTAG 777 0.3964 MYWRGVMTGQIGHGIMEEEIWRKGPWTAEEDKLLIEYVRMHGEGRWNSVARLTGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKNPTDAAEKAKNRFLRKQLFHQQQQQQQFQQQQQQQLQYNLDMKGVMSLFEENNNHKSLPYISQTRQEMFNMCQNTTEEQSYFMLNGNSSVPAATENDNLWDGLWNLDDVQGNFSVANATNKTGLYNLVAPYC* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4618 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 70 IPR017930 -
Mal1g4618 258 Gene3D - 23 75 - -
Mal1g4618 258 CDD SANT 80 121 IPR001005 -
Mal1g4618 258 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Mal1g4618 258 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Mal1g4618 258 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Mal1g4618 258 SMART sant 22 72 IPR001005 -
Mal1g4618 258 SMART sant 75 123 IPR001005 -
Mal1g4618 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Mal1g4618 258 PANTHER MYB TRANSCRIPTION FACTOR 4 250 - -
Mal1g4618 258 CDD SANT 25 70 IPR001005 -
Mal1g4618 258 Gene3D - 80 124 - -
Mal1g4618 258 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Mal1g4618 258 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Mal1g4618 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 4 250 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4618 Mal-Chr1 108097732 108099197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4618 16 258 MYB Transcription Factor Family AT4G13480 53.285 8.62e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g4618 Myb_DNA-binding 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4618 K09422 - gmx:100795981 401.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g4618 1 108097732 108099197 Mal1g4618 1 108097732 108099197 ECH