Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4604 ATGTCTAGCGGAAGGAAAGGTCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAGGTTACTTTCTCAAAACGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCTTGTGTGGTGCAGATGCTGCTCTTGTTGTATTCTCACCTAGTGGAAAGGTTTTTTCCTTCGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTAATCCCACCCCAAAACAACAACACCATGCAATTCATTGAGGCTCACCGCAGCGCCAACGTGCGTGAACTCAATGCTCAGCTGACTCAAATCAATAACATGTTGGACGCCGAGAAGAAGTTTAGCGATGAACTGAACCATTTGCGCAAGGCAGCTGAGGCTCGGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAGTAGTGATCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGGATGCTGCTACTCGAACTCTTCCATTTTTTGTTGGCAACGCGTCATCCTCTAACATTTATCTCCATCATCAGCCAAATCCTCAACAAGCTGAAATGTTTCCATCACAATTTTTTCAAAACCATATGTTGCAATTGCAGCCTCATTTTTTGATGGATCTATGA 654 0.448 MSSGRKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLIPPQNNNTMQFIEAHRSANVRELNAQLTQINNMLDAEKKFSDELNHLRKAAEARFWWACPVDGMSSDQLELFKKALEELKKLVIQDAATRTLPFFVGNASSSNIYLHHQPNPQQAEMFPSQFFQNHMLQLQPHFLMDL* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4604 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal1g4604 217 Gene3D - 91 165 - -
Mal1g4604 217 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal1g4604 217 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Mal1g4604 217 MobiDBLite consensus disorder prediction 1 21 - -
Mal1g4604 217 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal1g4604 217 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal1g4604 217 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal1g4604 217 Gene3D - 20 90 IPR036879 GO:0003677|GO:0046983
Mal1g4604 217 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 165 - -
Mal1g4604 217 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal1g4604 217 PANTHER MADS BOX PROTEIN 7 165 - -
Mal1g4604 217 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4604 Mal-Chr1 107799288 107799941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4604 5 181 Type I MADS-box Gene Family AT5G60440 55.435 4.54e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal1g4604 SRF-TF 4.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4604 - - mtr:MTR_1g105905 277.33