Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4579 ATGGAGGAGTCCTCTAGGGGCCGTACTCATTCTTCTCCTTTTGTTTTATGCAAGGTTTTGAGTAATGGATTTTTCTTCTGTTATGCTGATAAGCTTGGGTACACCTTTAGGGACGTAGGAGTCCCTCCTGATAGCTGGGAAGTGATGCACCCTGCTGCCGATCCCGAGAAGGGTAAAAAGTCGGCTTCGAATAGGTCATCTGCTTCATTTGTAAAAACTCAAGATTTGGTCTCCTTCAAACCCCTTGTCAAGCGTTTCGAGGTTTTCGTAGATTCCTTGAAGACCCCTTTCAAGTACAGGTACTTTTTGGTAAAGCCGGTAATGCCCGAGGCTCATGCCACGGTCTGTACCTTTCCTGCCAAGATAATGGAAGCCGAGGAGCCGCTTATCCCAAATGCTTTTGTGAAGTTGATGCAATCAAAAAGACGGGTATTGAAGGATTTTATACTAAGAGATAAAAGAGGAAGTAATTGGCTTGTCAAAGCGCGCCGTATTGGTGACGAGCTTTACTTTGACCATGGCTGGAAACAATTCAGAGAAGAAAACTGTTTAGAGGAAAATGACTTCCTTGTTTTCACACATATTGAAAACAATGTATTCAAGTTCAAAATCCTTGAACTATCATCAATGTGTGAAAAGATAAAGGAGTTTAGTAGAAGTGAACATCGACATTGTAGAACCTGCAAAGCATGGGACATTGGGAGCAGCTCTGCAGGATTAAACTTTGAAGATGATGATATTGATGCTGAAATGTACATTCAACCGGGAAATCCACACTTCATTGCAAAACATAATCGTTACAGACCCAACGAATTGGATATTCAATGCAATGAAATAGAAGCCTATCATCACATCTTGCCACAAATCCGCACAACAAATGCTGAAAGGAGAGGTGAAATACGTACTTGGAAAAATGGCCGAATCTTGGCGCTAGGGTGGGAAGATTTTCGTAGAAAGAGCAAGATCACAGAAAATGATAGATGCTTATGTGAAATTGTGCTGCGTAACGGAGAAGCAATAGAAATGCTAAGGGTGCACGTTGTTAAGAAGAAATGA 1056 0.4167 MEESSRGRTHSSPFVLCKVLSNGFFFCYADKLGYTFRDVGVPPDSWEVMHPAADPEKGKKSASNRSSASFVKTQDLVSFKPLVKRFEVFVDSLKTPFKYRYFLVKPVMPEAHATVCTFPAKIMEAEEPLIPNAFVKLMQSKRRVLKDFILRDKRGSNWLVKARRIGDELYFDHGWKQFREENCLEENDFLVFTHIENNVFKFKILELSSMCEKIKEFSRSEHRHCRTCKAWDIGSSSAGLNFEDDDIDAEMYIQPGNPHFIAKHNRYRPNELDIQCNEIEAYHHILPQIRTTNAERRGEIRTWKNGRILALGWEDFRRKSKITENDRCLCEIVLRNGEAIEMLRVHVVKKK* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4579 351 Gene3D - 103 211 IPR015300 -
Mal1g4579 351 PANTHER B3 DOMAIN-CONTAINING 104 223 - -
Mal1g4579 351 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 241 348 - -
Mal1g4579 351 PANTHER B3 DOMAIN-CONTAINING 241 348 - -
Mal1g4579 351 SUPERFAMILY DNA-binding pseudobarrel domain 129 206 IPR015300 -
Mal1g4579 351 PANTHER B3 DOMAIN-CONTAINING PROTEIN LOC_OS12G40080 104 223 - -
Mal1g4579 351 SMART B3_2 134 208 IPR003340 GO:0003677
Mal1g4579 351 ProSiteProfiles B3 DNA-binding domain profile. 113 208 IPR003340 GO:0003677
Mal1g4579 351 Pfam B3 DNA binding domain 129 204 IPR003340 GO:0003677
Mal1g4579 351 CDD B3_DNA 130 205 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4579 Mal-Chr1 106855556 106861197 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4579 127 212 B3 DNA Binding Superfamily AT3G18960 38.372 1.52e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal1g4579 B3 7.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4579 - - mtr:MTR_1g046320 230.335