Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4523 ATGGTTGAGAAAATTTCAATTACTCACAAATCGAGTAAATTTGATTTCGATGATCTAAATTGGACAAACATGATTCCAGAATGTCCAATATACCATCCATCAGAACAAGAATTTGAGCATCCTTTGGTTTATCTACAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTAGTGCCTCTAATCCTGCTGATTTAATCTTGATGAAAGAGAAAAAGGATTTTAAGTTTGAAACAATTGTGCAGCCTCTTCGCCTTTCGAAATGGAATGAGAAGGATATGATAACCTTTTCTAAGAGAGGAAGAAAATATACATATCATGAATTTGAAACTCTAGCAAACAAGGCCTTTTCAAATAGGTTTTGCAGTTCTGAAGATCTTTCTTCTTCGAATATCGAAAAAGCGTTCTGGCACGAAATGATTCATGGAGAGAAAGGAATGGTAGAGTATGGTGTCAACATTGAGGGTAGTGTCTTTTCAAGTGATCCTGATGATAAGCTTGGAAAAAGCAACTTCAATTTGAAGAATTTGGCGCGGCTACCGCAGTCTCCATTGCGTTTAGTTGACAGGGGAATTCCAGGAATAACTGATCCTATGCTTTACATTGGGATGCTATTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTACAGCATAAATTATCATCATTCAGGTGCAAATAAAACTTGGTATGGTGTGCCTAGCTCTGCAGCCTCTAAGTTTGAAAAGACTGTCTTGGATCATGTTTACTGCAACAAAGTCTTAACAGAACATGGAGAGAATGGTGCTTTCCAATTTCTTGCACAAAAAACAACCATGTTCTCTCCTGATTTCTTATTACAACATAATGTGCCGGTTTACACGACGGTGCAGAAGCCAGGCGAATTTGTCATCACATTTCCTAAATCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGGGCTGAAGCTAGCAAACGTTATTCACATCTCAAAGTGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAAGCAATGCTTATCTACAACTCCTCAAAAGCTAGAGAATACAAAATCAAACCTGAAGACACGGCATCTTATCGAGCTATTGTACTCTCTTTCTTGCATCTTATTCAATTTTATAAGACATCGCTATCGCGGTTGGACAGTTCTAGGAATCTGTCAAGCTCTTCAAATTCATCATTAGGTTCTGTGACATGCAGCCTCTGTTATAGGGATTGTTATGTAGCTTTCTTGTTGTGCAAGAAATGCTATTCCAATCCAATTTGCCTTTTCCATGACATTGTGCCGCAAACTTGCTTATGTGGGAGAAATCATACTGTTTTTAAGAGGAATGACATGTTTGAACTCGAAGAAGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATCGACACGTTATCTATAACAAATATATTCTCCTATAACAAAAATGAGTGTATCAAAGAACTCAAGAATAATAACTGGCATGAGGAAAAAAGTGCGAGAAGAGCTGTTAGCTCTCTAGGCGCAGCATCTAAACTGAAAACAAGAGTTGCGAATAACATCAAGCACGACAATGTTGAAATTAATCAAAAGAAGACAAAGAATCATTGCAGAAACAATGCGCCTCCATCAGTGATTAGGACCAAAAGACCACGAATCCTTTATGACATGAGAAAGCATGAATCAGAACTGATTATCAACGTTCCTGCAGTATCTTCCCTTTTGGCGACATCTGAAAAATCAAAGTAA 1809 0.3742 MVEKISITHKSSKFDFDDLNWTNMIPECPIYHPSEQEFEHPLVYLQKIAPEASKYGICKIVSPISASNPADLILMKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGRKYTYHEFETLANKAFSNRFCSSEDLSSSNIEKAFWHEMIHGEKGMVEYGVNIEGSVFSSDPDDKLGKSNFNLKNLARLPQSPLRLVDRGIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGANKTWYGVPSSAASKFEKTVLDHVYCNKVLTEHGENGAFQFLAQKTTMFSPDFLLQHNVPVYTTVQKPGEFVITFPKSYHAGFSHGFNCGEAVNFAIGDWFPLGAEASKRYSHLKVLPIIPYEELLCKEAMLIYNSSKAREYKIKPEDTASYRAIVLSFLHLIQFYKTSLSRLDSSRNLSSSSNSSLGSVTCSLCYRDCYVAFLLCKKCYSNPICLFHDIVPQTCLCGRNHTVFKRNDMFELEEAAKSFQQEKECIDTLSITNIFSYNKNECIKELKNNNWHEEKSARRAVSSLGAASKLKTRVANNIKHDNVEINQKKTKNHCRNNAPPSVIRTKRPRILYDMRKHESELIINVPAVSSLLATSEKSK* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4523 602 Pfam C5HC2 zinc finger 425 477 IPR004198 -
Mal1g4523 602 Pfam jmjN domain 29 61 IPR003349 -
Mal1g4523 602 SMART JmjN_1 27 68 IPR003349 -
Mal1g4523 602 ProSiteProfiles JmjN domain profile. 28 69 IPR003349 -
Mal1g4523 602 Pfam JmjC domain, hydroxylase 205 328 IPR003347 -
Mal1g4523 602 SUPERFAMILY Clavaminate synthase-like 106 361 - -
Mal1g4523 602 Gene3D Cupin 28 389 - -
Mal1g4523 602 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 585 - -
Mal1g4523 602 SMART cupin_9 175 345 IPR003347 -
Mal1g4523 602 ProSiteProfiles JmjC domain profile. 175 345 IPR003347 -
Mal1g4523 602 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 8 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4523 Mal-Chr1 104995796 105017861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4523 25 487 JUMONJI Transcription Factor Family AT2G34880 31.343 1.67e-60 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mal1g4523 JmjC 1.4e-41 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4523 - - gmx:100809650 835.869