Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4519 ATGGGGCGTGGAAAGATAGAGATAAAGAAGATTCAAAACACAACAACTAGGCAAGTTACATTTTCCAAAAGAAGAACTGGATTATTGAAGAAAACTCATGAACTTTCTGTGCTTTGTGAAGCACAAATTGGACTCATCATTTTCTCAAGCACCGGAAAACTCTTCCAATATTGCTCTGATTCCACTAGGATGGACCAAATCATTGAAAGGTACCAGAGAAGTACAGGTAAACGCATTATGGAGGAGCATGATGATCACCAGATTCACCCCAGGGAACTAGAAATGTTCCATGACATGGCAATGCTGAGGCAAGAAAGTCTTCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGCTGACATGAATGGGTTAAAGTTTGATGATTTGACTAAAATTGAAGAACAATTGGAGATTTCTCTTGCTAAAGTTCGTCACAGTAAGAATGAGCTGTTGCAGCAGCAAATAGAAAATCTACGAAGGAAGGAAAAAATCTTGCAAGATGAAAATATCAATTTATCCAACTGGGAGCACAAGGCAGTGATGGAATATCACAAGGCTGCAGTGGAAGAAAACAAAGCAATGCAACAACATGTAATTGATGAGTTTGCATTTTTTGAAAACCAACCTCCTAGTAGCATCCTTCAATTAGCTGCTCCTATGCTTCCTCCACACCATAACCCTTTTCTTCAACTTGCTCAACCAAATCTTCAAGATTATCTCAAGAATAGGGACCATGATCAGCCATAA 747 0.3909 MGRGKIEIKKIQNTTTRQVTFSKRRTGLLKKTHELSVLCEAQIGLIIFSSTGKLFQYCSDSTRMDQIIERYQRSTGKRIMEEHDDHQIHPRELEMFHDMAMLRQESLRLELGIQRYLGADMNGLKFDDLTKIEEQLEISLAKVRHSKNELLQQQIENLRRKEKILQDENINLSNWEHKAVMEYHKAAVEENKAMQQHVIDEFAFFENQPPSSILQLAAPMLPPHHNPFLQLAQPNLQDYLKNRDHDQP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4519 248 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Mal1g4519 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal1g4519 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal1g4519 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal1g4519 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal1g4519 248 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Mal1g4519 248 Pfam K-box region 94 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g4519 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal1g4519 248 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mal1g4519 248 ProSiteProfiles K-box domain profile. 92 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal1g4519 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal1g4519 248 Coils Coil 148 178 - -
Mal1g4519 248 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 222 IPR031050 GO:0005634|GO:0048316
Mal1g4519 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal1g4519 248 PANTHER MADS BOX PROTEIN 1 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4519 Mal-Chr1 104970379 104973458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4519 1 238 MADS-box Gene Family AT5G23260 47.036 1.35e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal1g4519 K-box 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4519 - - gmx:100783876 305.064