Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4495 ATGGCTGGAATAAGGGAACAAGACCAATACATGCCAATAGCAAACGTGATTCGTATAATGCGACGAATTCTTCCGTCACATGCGAAAATCTCCGACGACGCAAAAGAGACAATTCAAGAATGTGTTTCAGAATACATAAGCTTCATAACTTCAGAAGCAAACGACCGTTGCCAAAGGGAACAAAGAAAAACAGTTACAGCAGAAGATATACTTTGGGCAATGGGGAAACTAGGTTTTGATGATTATGTTCATCCTTTAACATTTTATCTTCAACGTTACCGTGAAAGTGAAGGTGAACCTGCTTCTGTTAGACGCACTTCTTCACTTGCTATGCCTCCTTCTCTTCCAATGCAGCAGCTTCCATCATTATCATCAATGCCACTTCCTCAAAATAATAATGGCTATGGTTATGGTTATGGTTTTGATTTTGATCAAGGGTTTTATAGAGATAGTGGTGGTGATGCTGCAACTTCTTCTGCTAGTTTTGTACCAAATTTTGATTATAGTTTTCATTATCACAAACGTGATAATAATAATAATAATAAGGGTTAA 552 0.3732 MAGIREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTVTAEDILWAMGKLGFDDYVHPLTFYLQRYRESEGEPASVRRTSSLAMPPSLPMQQLPSLSSMPLPQNNNGYGYGYGFDFDQGFYRDSGGDAATSSASFVPNFDYSFHYHKRDNNNNNKG* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4495 183 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Mal1g4495 183 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Mal1g4495 183 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Mal1g4495 183 Gene3D Histone, subunit A 2 116 IPR009072 GO:0046982
Mal1g4495 183 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mal1g4495 183 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Mal1g4495 183 SUPERFAMILY Histone-fold 7 104 IPR009072 GO:0046982
Mal1g4495 183 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 125 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mal1g4495 183 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4495 Mal-Chr1 104208387 104208938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4495 4 119 CCAAT-HAP3 Transcription Factor Family AT5G47670 72.414 2.19e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mal1g4495 CBFD_NFYB_HMF 9.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4495 K08065 - gmx:547959 204.912