Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4468 ATGCTTCAGAACATGAAGCTCTTTCCATTGTCGTGTCTTCTATTGCTCTTCTATGTGTTTGTTATGGCGACATCATCACTTCATGATGCAGATGCTCTGTTGAAGTGGAAAGCAACATTTGACAACCAAAGTAAACCTTTGCTCTCTTCATGGATTGGTAATAATCCTTGTAGTTGGGAAGGAATCACATGTGATGATAACTCAAAGTACATCTACAAGGTAAATCTCACCAATATTGGAGTAAAAGGTACGCTTCAAAGTCTCAATTTATCATCACTTCCAAAAATCCAAACCTTAGTTTTAAAAAACAACTCTTTCTACGGAGTTGTTCCGCACCATATTGGAGTGATGTCAAATTTAGACACTCTTGATTTGTCACTAAATAAACTCTCGGGTAGCATTCCTAATAGCATTGGTAATTTGTCCAAACTATCCTATCTTGATCTCAGTTTCAATTATCTCAATGGGATTATTCCATTTGAGATAACCCAATTGGTTGGTCTTTATGTATTGTCTATGGGTACTAACCATAATTTGAGTGGATCACTACCTCAAGAAATTGGTAGATTGAGAAATTTGACAATGCTTGATATTTCTTCATGCAATCTCACAGGGACTATACCAATCTCTATAGGAAAGATAACCAACATATCACATCTTGATGTAGCACAAAACAACCTTTTTGGCAACATTCCTGACAAAATTTGGAAAATGGATCTAAAGTATTTGTCACTTGCAAATAATAACTTTAATGGTTCCTTCTCACAAAATATTTTCAAGGCACGAAACCTAGAGTTACTTCATCTTCAAAAAAGTGGTCTTTCAGGTTTCATGCCTAAGGAATTTGGGATGTTGGGTAATTTAATAGATCTTGATATTAGTAAGTGCAATCTCATTGGGTCTATCTCTATTTCTATAGGAAAGTTGGCCAATATATCAAATCTCCAGTTACATGACAACCAGCTTTTTGGCCACATTCCTCGTGAAATTGGGAATTTGGGCTACCTCCATAGATTAAATCTTCGAAATAACAGTCTTTCTGGCTTCATTCCCCAAGAAATTGGATTTCTAAAACAACTCGGTGATCTTGATTTGTCTCAGAATTATCTCTCTGGCACAATCCCTTCTACAATTGGAAATTTGAGCAATTTATATTATCTTTACCTCTATGAAAACCAACTCATTGGTAGAATTCCAAGTGAAGTTGGAAAGCTCTATTCCCTTTCCACAATCCAGTTGTCAGACAACAACTTCTCTGGACCAATCCCATCTTCCATCGGTAACTTGGTCAATTTGGATTCTATTATCCTTTTTCAAAATAACCTCTCTGGACCTATTCCTTCCAGTATTGGAAATTTGACAAAACTCACTACATTAAAACTTTTCTCAAATGAGCTTAGTGGAAATATTCCAAAAGAAATGAATAGGATAACCAATTTGAAAATTTTGCAATTGTCCGATAATAATTTCATAGGCAATTTACCTCAGAACATTTGCGTTGGTGGAATGTTGACAAGTTTCACTGCAGATAATAACCAGTTCACAGGTCCAATTCCAGATAGTTTAAAGAATTGTTCTAGCCTTCATAGAGTTAGGCTTCAACAAAACAATTTAACTGGTAATATAACAAATGGTTTTGGTGTGTATCCAAATTTGGACTACATGGAATTGAGCGATAATAATTTTTACGGCCATCTATCACCAAATTGGGGAAAGTGCAAGAACCTCACAAGCCTTAAAATCTCCAATAACAATTTAACAGGAAGCATACCACCAGAATTGGCTGAAACAACTAATTTACATGAACTTAACTTGTCATCAAACCATCTTACCGGAAAAATTCCAAAGGATCTAGGAAACTTATCTTTGTTGATCAAACTCTCGATAAGTAACAATCATCTGTCTGGAGAAGTTCCTGTACAAATTGCATCATTGCAACAACTAACTTCCTTGGAGCTTGCTGCAAATAATTTAAGTGGCTTCATCCCTAAAAGCCTTGGAAGGTTGTCTGAGTTAATACATATGAATTTGAGCCAAAATAAGTTTGAAGGAAACATTCCCGTTGAATTTGGCCAATTAGAAGTTATTGAAGATCTTGATCTTAGTGGAAATTTTTTGAATGGAACCGTACCAGCAATGCTTGGACAGTTAAATCACTTACAAACATTGAATCTTTCACATAATAATCTTTCTGGAACCATTCCCTTGAGCTATGGTGAGATGTCAAGCTTGACAACTGTTGATATATCATACAACCAATTGGAGGGTCCAATTCCAAGCATTCCAGCTTTCCAAAAAGCTCCAACTGAAGCATTGAGAAATAACAAAGGTTTGTGTGGTAATGTCTCTGGCCTAGAGCCTTGCTCAACTGCAGGTGGAAACTTTCATAGTCATAAGACTAACAAAATTTTGGTTCTAGTTTTGCCCCTCACTCTTGGCACTCTATTGTTAGCATTGTTTGTGTATGGGATCTCATATTGCCAAACTTCAAGAAAAAAAGAATACAAGCCAACAGAAGAATTCCAAACTGAAAATCTATTTGCGATATGGAGTTTTGATGGAAAAATGGTGTATGAGAACATTATCGAAGCCACCGAAGATTTTGACAACAAGCATCTCATTGGGGTTGGAGGACATGGAAGTGTTTACAAAGCAGAGTTGCCAACAGGTCAAGTTGTAGCTGTGAAGAAACTCCATTCATTACAAAATGAAGAAATGTCTAATTTGAAAGCTTTCACAAATGAGATCCATGCTTTGACAGAAATTCGACATCGTAACATTGTGAAGTTATATGGATTTTGTTCACATCGACTACACTCATTTTTGGTTTATGAATTCTTGGAGAATGGTAGCGTGGACAATATTTTGAAGGACAATGAACAAGCTGTTGAATTTGAATGGAATAGGAGGGTAAATGTCATTAAAGATATAGCTAATGCTTTATGCTATTTGCATCATGATTGCTCCCCTCCTATTGTTCATCGAGATATATCCAGCAAGAATGTTATTTTGGATTTGGAATATGTAGCTCATGTCTCAGATTTTGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATATGACTTCTTTTGCAGGCACCTTTGGATATGCAGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTATTAACCTTAGAAATACTTTTTGGAAAGAACCCTGGAGATGTTGTAACTTCTTTGTGGCAACAACCTTCACAAAGTGTTATGGACCTCACACTTGATACTATGCCATTGATAGATAAGTTAGACCAACGTCTCCCTCATCCTACAAATACCATTGTTAAAGAGGTGGCATCGATGATAAGGATTGCAGTTGCTTGCTTAACTGAAAGCCCGCGTTCTCGCCCTACCATGGAGCAGGTCTGCAAGGAGTTTGTAAAGTCGTAA 3438 0.3642 MLQNMKLFPLSCLLLLFYVFVMATSSLHDADALLKWKATFDNQSKPLLSSWIGNNPCSWEGITCDDNSKYIYKVNLTNIGVKGTLQSLNLSSLPKIQTLVLKNNSFYGVVPHHIGVMSNLDTLDLSLNKLSGSIPNSIGNLSKLSYLDLSFNYLNGIIPFEITQLVGLYVLSMGTNHNLSGSLPQEIGRLRNLTMLDISSCNLTGTIPISIGKITNISHLDVAQNNLFGNIPDKIWKMDLKYLSLANNNFNGSFSQNIFKARNLELLHLQKSGLSGFMPKEFGMLGNLIDLDISKCNLIGSISISIGKLANISNLQLHDNQLFGHIPREIGNLGYLHRLNLRNNSLSGFIPQEIGFLKQLGDLDLSQNYLSGTIPSTIGNLSNLYYLYLYENQLIGRIPSEVGKLYSLSTIQLSDNNFSGPIPSSIGNLVNLDSIILFQNNLSGPIPSSIGNLTKLTTLKLFSNELSGNIPKEMNRITNLKILQLSDNNFIGNLPQNICVGGMLTSFTADNNQFTGPIPDSLKNCSSLHRVRLQQNNLTGNITNGFGVYPNLDYMELSDNNFYGHLSPNWGKCKNLTSLKISNNNLTGSIPPELAETTNLHELNLSSNHLTGKIPKDLGNLSLLIKLSISNNHLSGEVPVQIASLQQLTSLELAANNLSGFIPKSLGRLSELIHMNLSQNKFEGNIPVEFGQLEVIEDLDLSGNFLNGTVPAMLGQLNHLQTLNLSHNNLSGTIPLSYGEMSSLTTVDISYNQLEGPIPSIPAFQKAPTEALRNNKGLCGNVSGLEPCSTAGGNFHSHKTNKILVLVLPLTLGTLLLALFVYGISYCQTSRKKEYKPTEEFQTENLFAIWSFDGKMVYENIIEATEDFDNKHLIGVGGHGSVYKAELPTGQVVAVKKLHSLQNEEMSNLKAFTNEIHALTEIRHRNIVKLYGFCSHRLHSFLVYEFLENGSVDNILKDNEQAVEFEWNRRVNVIKDIANALCYLHHDCSPPIVHRDISSKNVILDLEYVAHVSDFGTSKFLNPNSSNMTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVLTLEILFGKNPGDVVTSLWQQPSQSVMDLTLDTMPLIDKLDQRLPHPTNTIVKEVASMIRIAVACLTESPRSRPTMEQVCKEFVKS* 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4468 1145 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Mal1g4468 1145 Gene3D Ribonuclease Inhibitor 254 373 IPR032675 -
Mal1g4468 1145 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 348 1144 - -
Mal1g4468 1145 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 265 418 - -
Mal1g4468 1145 SUPERFAMILY RNI-like 362 759 - -
Mal1g4468 1145 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 128 265 - -
Mal1g4468 1145 ProSitePatterns Protein kinases ATP-binding region signature. 874 897 IPR017441 GO:0005524
Mal1g4468 1145 SMART LRR_typ_2 477 501 IPR003591 -
Mal1g4468 1145 SMART LRR_typ_2 309 333 IPR003591 -
Mal1g4468 1145 SMART LRR_typ_2 645 669 IPR003591 -
Mal1g4468 1145 SMART LRR_typ_2 381 405 IPR003591 -
Mal1g4468 1145 SMART LRR_typ_2 117 141 IPR003591 -
Mal1g4468 1145 SMART LRR_typ_2 597 621 IPR003591 -
Mal1g4468 1145 SMART LRR_typ_2 717 739 IPR003591 -
Mal1g4468 1145 SMART LRR_typ_2 741 766 IPR003591 -
Mal1g4468 1145 ProSitePatterns Tyrosine protein kinases specific active-site signature. 992 1004 IPR008266 GO:0004672|GO:0006468
Mal1g4468 1145 Gene3D Transferase(Phosphotransferase) domain 1 947 1145 - -
Mal1g4468 1145 Gene3D Ribonuclease Inhibitor 28 179 IPR032675 -
Mal1g4468 1145 Gene3D Ribonuclease Inhibitor 374 477 IPR032675 -
Mal1g4468 1145 Pfam Leucine Rich Repeat 336 357 IPR001611 GO:0005515
Mal1g4468 1145 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 8 169 - -
Mal1g4468 1145 Gene3D Ribonuclease Inhibitor 180 242 IPR032675 -
Mal1g4468 1145 Gene3D Phosphorylase Kinase; domain 1 825 946 - -
Mal1g4468 1145 PRINTS Leucine-rich repeat signature 144 157 - -
Mal1g4468 1145 PRINTS Leucine-rich repeat signature 717 730 - -
Mal1g4468 1145 ProSiteProfiles Leucine-rich repeat profile. 119 141 IPR001611 GO:0005515
Mal1g4468 1145 Pfam Protein kinase domain 869 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g4468 1145 ProSiteProfiles Protein kinase domain profile. 868 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal1g4468 1145 Pfam Leucine rich repeat 94 154 IPR001611 GO:0005515
Mal1g4468 1145 Pfam Leucine rich repeat 647 704 IPR001611 GO:0005515
Mal1g4468 1145 Pfam Leucine rich repeat 575 634 IPR001611 GO:0005515
Mal1g4468 1145 ProSiteProfiles Leucine-rich repeat profile. 599 622 IPR001611 GO:0005515
Mal1g4468 1145 Gene3D Ribonuclease Inhibitor 483 791 IPR032675 -
Mal1g4468 1145 SUPERFAMILY RNI-like 74 380 - -
Mal1g4468 1145 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 169 - -
Mal1g4468 1145 SUPERFAMILY Protein kinase-like (PK-like) 850 1140 IPR011009 -
Mal1g4468 1145 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 128 265 - -
Mal1g4468 1145 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 348 1144 - -
Mal1g4468 1145 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 265 418 - -
Mal1g4468 1145 ProSiteProfiles Leucine-rich repeat profile. 719 740 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4468 Mal-Chr1 103687971 103691571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4468 23 617 Receptor kinase-like Gene Family AT4G08850 35.510 1.15e-95 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mal1g4468 Pkinase 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4468 - - mtr:MTR_1g040615 1502.26