Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4387 ATGGCAATGAGGCAAATACTCTGTAGGGGTGGACTCAGACATGAATTTTCAATGGGGCTAAATTTTTTGATTCAAGAACTTAATTATAATAGATTTACTAAAAATCTCAATTTTTCATCACTTCCAAAAATCCACACCTTATTTTTAAAAAACAACTCCTTCTACGGAGTTGTTCCACACCATATCGGGGTGATGTCAAATCTAGACACTCTTGATTTGTCACTTAATAAACTCTCTGGTAGCATTCCCAATGAAGTTGGAAAGCTCAACTCCCTTACCACAATCCAATTTATCGGAAATTTGACAAAACTCACTAAGTTATCTCTTATTTCAAATGCTCTCATTGAAAATATTCCAACAGAAATAAATAGGCTTACTAATTTTGAAATTCTCCAGTTATGTGATAATAATTTCACAGGTCATTTACCTCACAATATTTGTGTTAGTGGAAAGTTAACTCGTTTCTCCACTAGTAATAACCAGTTCACTGGTCTAGTTCCAGAGAGTTTAAGGAATTGCTCAAGCCTTACCAGAGTGAGACTTCAACAAAACCAATTGACTGGAAATATAACAGATAGCTTTGGTGTGTATCCAAATTTGGAATACATGGAATTGAGTGATAATAATTTTTATAGCCATCTTTCTCCAAATTGGGGAAAGTGCAAAAATCTCACAACCCTTAAAATCTCCAATAATAATATATCGGGAAGCATACCACCAGAACTGGCCGAGCCAACCAATTTAACTATACTCGACCTTTCCTCAAATCAACTTACAGGAGAAATTCCAAAGGATAGCAATCATCTTGCAGGAGAAGTTCCTGTACAAATTGCATCATTGCAGAAACTAACTACCTTGGAGCTTGCAACAAATAATTTAAGTGGCTTCATCCCAGATCAAATTGGAAGATTACCTATGCTATTGGACTTGAATTTGAGCCAAAACAAGTTTGAAGGAAGCATTCCTGTTGAGTTTGGACAATTGAAAGTTATTGAAAATCTTGATCTTAGTGAGAATTCTTTGAATGGAACCATACCAACAATGCTTGGACAGTTAAATCGCTTAGAAACATTGAATATTTCGCATAATAATCTTTCTGGTACAATTCCCTCGACCTATGGTGAGATGTCAAGTTTGACAACTGTTGATATCTCATACAACCATTTCGAGGGTCCAATTCCAAACATTCCAGCCTTCCAAAAAGCTCCAATTGAAGCATTGAGAAATAACAAAGGCTTGTGTGGTAACTCTGGCTTAGAGCCTTGCTCAATATTAGGTGGCAACTTTCATAGTCATAAGACTAAAATCATATTTGTTACAGAGCTTGCATACACAATGGAAGTAAATGAGAAGTGTGATGTGTATAGTTTTGGGGTATTAACCATGGAAATACTTTTTGGAAATCACCCTGGAGATATTGTATATACTGCTTTGCATTCAAGTGGTATACACTTAACAATTGATGATATGTCGTTGAATGATAAGTTGGATCAACGCCTCCCTCATCCTACTAATGATATCGAGAAAGAGGTGTTATCAATTATGAGGATTGCAATTCATTGCTTAACTGAGAGCCCACATAATCGCCCTAACATGGAGCAAGTTTGCAAGGAGATTGTTCTGTCAAAGTCATCTTAA 1638 0.3596 MAMRQILCRGGLRHEFSMGLNFLIQELNYNRFTKNLNFSSLPKIHTLFLKNNSFYGVVPHHIGVMSNLDTLDLSLNKLSGSIPNEVGKLNSLTTIQFIGNLTKLTKLSLISNALIENIPTEINRLTNFEILQLCDNNFTGHLPHNICVSGKLTRFSTSNNQFTGLVPESLRNCSSLTRVRLQQNQLTGNITDSFGVYPNLEYMELSDNNFYSHLSPNWGKCKNLTTLKISNNNISGSIPPELAEPTNLTILDLSSNQLTGEIPKDSNHLAGEVPVQIASLQKLTTLELATNNLSGFIPDQIGRLPMLLDLNLSQNKFEGSIPVEFGQLKVIENLDLSENSLNGTIPTMLGQLNRLETLNISHNNLSGTIPSTYGEMSSLTTVDISYNHFEGPIPNIPAFQKAPIEALRNNKGLCGNSGLEPCSILGGNFHSHKTKIIFVTELAYTMEVNEKCDVYSFGVLTMEILFGNHPGDIVYTALHSSGIHLTIDDMSLNDKLDQRLPHPTNDIEKEVLSIMRIAIHCLTESPHNRPNMEQVCKEIVLSKSS* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4387 545 Gene3D Ribonuclease Inhibitor 9 96 IPR032675 -
Mal1g4387 545 ProSiteProfiles Leucine-rich repeat profile. 67 89 IPR001611 GO:0005515
Mal1g4387 545 SUPERFAMILY RNI-like 97 391 - -
Mal1g4387 545 SUPERFAMILY L domain-like 27 100 - -
Mal1g4387 545 ProSiteProfiles Leucine-rich repeat profile. 247 269 IPR001611 GO:0005515
Mal1g4387 545 Pfam Leucine rich repeat 332 389 IPR001611 GO:0005515
Mal1g4387 545 Pfam Leucine rich repeat 198 258 IPR001611 GO:0005515
Mal1g4387 545 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 95 - -
Mal1g4387 545 Pfam Protein tyrosine and serine/threonine kinase 441 538 IPR001245 GO:0004672|GO:0006468
Mal1g4387 545 ProSiteProfiles Leucine-rich repeat profile. 223 245 IPR001611 GO:0005515
Mal1g4387 545 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 26 95 - -
Mal1g4387 545 SMART LRR_typ_2 65 89 IPR003591 -
Mal1g4387 545 SMART LRR_typ_2 246 269 IPR003591 -
Mal1g4387 545 SMART LRR_typ_2 101 125 IPR003591 -
Mal1g4387 545 SMART LRR_typ_2 352 376 IPR003591 -
Mal1g4387 545 SMART LRR_typ_2 280 304 IPR003591 -
Mal1g4387 545 SUPERFAMILY Protein kinase-like (PK-like) 441 539 IPR011009 -
Mal1g4387 545 Gene3D Transferase(Phosphotransferase) domain 1 424 544 - -
Mal1g4387 545 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 98 439 - -
Mal1g4387 545 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 440 545 - -
Mal1g4387 545 Gene3D Ribonuclease Inhibitor 97 423 IPR032675 -
Mal1g4387 545 PRINTS Leucine-rich repeat signature 248 261 - -
Mal1g4387 545 PRINTS Leucine-rich repeat signature 352 365 - -
Mal1g4387 545 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 440 545 - -
Mal1g4387 545 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 98 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4387 Mal-Chr1 101536827 101544564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4387 44 439 Receptor kinase-like Gene Family AT4G08850 41.452 5.43e-94 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mal1g4387 PK_Tyr_Ser-Thr 7.6e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4387 - - mtr:MTR_0365s0020 665.225