Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4271 ATGGCAGATCCTGATTGTTATGGGAATCCTGAACGTGATATAGAACAAGCATTCGTTACTTTAAAAAGAGGAACCCAGTTAGTTAAGTATAGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTGTCACAGGATGAAACATCACTAATTTGGATTTCTCATGGAAAGGAAAAGAATCTGAAGTTGTCTTCGGTTTTGCGCATCATCTCAGGACAGAGAACAGCTGTATTTAGAAGATATTTGCGGCCTGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAAAGGCGAACGATCACTTGATCTGATCTGCAAGGATACAGCTGAGGTTGAGATATGGCTTTCGGGCCTTAAGGCATTAATTTCTACTGGACAGCATAGAAATCGGCGCACTAGAAGTGATTTAACAGATGATAGTGTTGACATTTCTCCGATTGATCGTCCTTTCGGTGGAGCACTAGAGTTTACTGCAAGTATTTCCAAGGGAAGGTTTTCTTTTGAATCAGTTCCTCGTGAATCCACATCGCACAGAAGATCTGATGTGGGGTCAGATCATACAAGTATGCCGCCAGTAAGGACAAGTGTTGGAGATGGTTCCCGTGTCAGTGTATCAAGTACTAACTATGCTAGTAGTGTAGGATCAGGACCAGATGACATAGAGTCTCTTGGTGATGTTTTCATATGGGGAGAGGTTTGGGCCGACGGCAATTCCTCCGATGGATTAGGGAGTCAAGTCCCTTCCAAGACAGACATGTTGATTCCCAAGCCATTGGAGTCTGATGTTGTTCTTGATGTTAATTATATAGAACCCGGTGTAAGTCACATTGCTCTAGTAACAAGGCAAGGTGAGCTTTTTACCTGGGGAGAGGACTCTGGTGGAAGACTCGGTCATGGGTTTGATAAAGATTTTGGTAAACCCCGTCTTGTTGAGTCCCTAGCCATTACTAGTGTGAGTTTTGTTTCTTGTGGTGAATATCATACATGTGCGGTATCAACATCCGGGGATCTATACACCTGGGGTGACGGTACACATAACGCGGGAATTCTAGGTCATGGAACTGATGTTAGCCACTGCATACCAAAGAGGGTCACTGGCCCTTTAGAGGGACTTCAGGTTGTATCTATAGCATGTGGCGCATGGCATACGGCATTGATAACTTCCAATGGGAAACTTTTTACCTTTGGTGAAGGAACGCTTGGTATCTTGGGGCATGGAGACAGAGAGAGTGTGGCATATCCAAAGGAGGTACAGTTATTGAGTGGACATAAGGCTACTAAGGTTGCATGTGGAGTGTGGCACACGGCAGCCATTATAGAGGCTAATGATCAATCTGGTTCAAGTTCAAATACTTCTTCGTCAAAGAAATTATTCACATGGGGTGACGGCGATCAATATCGTTTAGGTCATGCTAACAAGGAAACCTACCTTCAACCAACTTGTGTGGCTGCACTTGGTGATTATAATTTTCACCAGGTTGCATGTGGACATAGTTTGACAGTTGCACTAACCTCATCCGGTCATGTTTTTACTATGGGGAGCAAGGCCTATGGTCAACTAGGAAATCCAAACTCTGATGGAAAAGTGCCGATTCTAGTAAGAGATAAATTACAAGGTGAATCTGTTGAGGAAATATCGTGCGGAACACATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGATTAGGGCATGGAGACATAGAAGATCAGAAAACTCCAACATTGGTGGAAACTTTGAAAGAAAGGCATGTCAAGAGTATCGCATGTGGTGCAAATTTTACAACTTGTATATGCATACATAAGTGGGTTTCAGGGAATGACCAATCGGTTTGCTCCGGTTGTAGACAACCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGTATTGCCATCCTTGTAGTTCAAAAAAGGCGCTGAAAGCAGCATTGGCTCCAACGCCTAGCAAACCACATCGTGTTTGTGATGCTTGTTATGCTAAACTTAAAGGTTCCGAGAGTAGTAGTGCTTCCAATTTCAATAGAGATATGACCCGTCCTTCTAGCTCCGTGTATGGAAGGGAAAGAATTGATAGGGTTGAGGTAAGGCCTTCAAAACTTCTTCTGTCTTCTGCCACAGGTCTAGTGAAATCCCTTGACATAAGGAGTAACATGCTTGGAAATACACATGAATCATCTTCCATGGCCAGAGACCCGTTGCAATTGAAAGATATCACATTTCCTGGTTCATCAAGTGCACCACAGAATGCTTCCAGGCCTCTTATTATGCAGCAAACCCAACCTCCAACTCTACCTCAATCGGCTAATTCAAGATCAACCTCGCCGTACTCGAGAAGACCGCCTAGCCCGACACGATCTACCTCCCCTGGATTTTCAAGAAGTATTATTGATAATTTAAAGAAGAAAAATGAGCTTCTGAATCAAGAAGTCTCAAAGTTGCAGAACCATATTCGAAGTTTGAAGCAAAAGGGTGACATGCAAGATATGAAGATTCGGGAGCTTCAGAAAAATATTGAGGAAGCCAATCTATTGGCTGGAGATGAATCTTCTAAGCATAGAGAAGCAAAGGAATTCATCAAGTCCATGACAGAAGAGTTGAGGGAAGTGACTGAAAAGTTGCCACCAGAGATTCCTGGCAGTGAAACCTTGAAAGTGATCCATGCTCAAGCTCAAAATATTCTGAAAGAAAATTTAGAATTTGAATCTTCACCTTTCCAATCAAGTTTCGAGTCTGAGCAACAAAGTGTGCATGATATACCAGCATCAGATAGTGATTCTTCAAACCTTCAAGAGCAAAGACTTGAAGGAAACAACGAAGTTACTGAGGTTGTTCCATCTATAGATGGAGGAAATGTTCGTCGAGAAAGAAGCTCGGAAAATAGTACCAGATCACATGAGTCGTCCAGGCCTGTGAGAGAAGGAGAAACATCGGTCATTGAACAATTTGAACATGGCGTTTATGTCACAGTCATAGTACTACATGATGGCAGCAAGGTTTTCAAACATGTTAGATTCAGTAAGAGAAGATTCAATGCGCAACAAGCCGAAGAATGGTGGAACAATAACAAAGATAGGGTGCATAGGAGATATAGTCCACCACCTATAAATAATGAAAGTATTGGTTCATCTAGCACCCAACCTAATGGTGGAGAAAATGTTGAGGCATGA 3213 0.4217 MADPDCYGNPERDIEQAFVTLKRGTQLVKYSRKGKPKLCNFRLSQDETSLIWISHGKEKNLKLSSVLRIISGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDTAEVEIWLSGLKALISTGQHRNRRTRSDLTDDSVDISPIDRPFGGALEFTASISKGRFSFESVPRESTSHRRSDVGSDHTSMPPVRTSVGDGSRVSVSSTNYASSVGSGPDDIESLGDVFIWGEVWADGNSSDGLGSQVPSKTDMLIPKPLESDVVLDVNYIEPGVSHIALVTRQGELFTWGEDSGGRLGHGFDKDFGKPRLVESLAITSVSFVSCGEYHTCAVSTSGDLYTWGDGTHNAGILGHGTDVSHCIPKRVTGPLEGLQVVSIACGAWHTALITSNGKLFTFGEGTLGILGHGDRESVAYPKEVQLLSGHKATKVACGVWHTAAIIEANDQSGSSSNTSSSKKLFTWGDGDQYRLGHANKETYLQPTCVAALGDYNFHQVACGHSLTVALTSSGHVFTMGSKAYGQLGNPNSDGKVPILVRDKLQGESVEEISCGTHHVAVLTSRSELYTWGRGANGRLGHGDIEDQKTPTLVETLKERHVKSIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDACYAKLKGSESSSASNFNRDMTRPSSSVYGRERIDRVEVRPSKLLLSSATGLVKSLDIRSNMLGNTHESSSMARDPLQLKDITFPGSSSAPQNASRPLIMQQTQPPTLPQSANSRSTSPYSRRPPSPTRSTSPGFSRSIIDNLKKKNELLNQEVSKLQNHIRSLKQKGDMQDMKIRELQKNIEEANLLAGDESSKHREAKEFIKSMTEELREVTEKLPPEIPGSETLKVIHAQAQNILKENLEFESSPFQSSFESEQQSVHDIPASDSDSSNLQEQRLEGNNEVTEVVPSIDGGNVRRERSSENSTRSHESSRPVREGETSVIEQFEHGVYVTVIVLHDGSKVFKHVRFSKRRFNAQQAEEWWNNNKDRVHRRYSPPPINNESIGSSSTQPNGGENVEA* 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4271 1070 MobiDBLite consensus disorder prediction 1040 1070 - -
Mal1g4271 1070 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1052 - -
Mal1g4271 1070 Pfam Transcription factor BRX N-terminal domain 862 892 IPR027988 -
Mal1g4271 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 456 507 IPR000408 -
Mal1g4271 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 391 442 IPR000408 -
Mal1g4271 1070 SUPERFAMILY FYVE/PHD zinc finger 612 683 IPR011011 -
Mal1g4271 1070 SUPERFAMILY RCC1/BLIP-II 225 613 IPR009091 -
Mal1g4271 1070 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 616 678 IPR017455 -
Mal1g4271 1070 SMART fyve_4 610 679 IPR000306 GO:0046872
Mal1g4271 1070 Coils Coil 811 838 - -
Mal1g4271 1070 ProSiteProfiles BRX domain profile. 991 1046 IPR013591 -
Mal1g4271 1070 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 377 387 IPR000408 -
Mal1g4271 1070 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1052 - -
Mal1g4271 1070 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Mal1g4271 1070 CDD PH_PLC_plant-like 12 124 - -
Mal1g4271 1070 Gene3D - 453 625 IPR009091 -
Mal1g4271 1070 MobiDBLite consensus disorder prediction 919 991 - -
Mal1g4271 1070 MobiDBLite consensus disorder prediction 188 204 - -
Mal1g4271 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 335 IPR000408 -
Mal1g4271 1070 MobiDBLite consensus disorder prediction 170 204 - -
Mal1g4271 1070 Gene3D - 347 452 IPR009091 -
Mal1g4271 1070 Gene3D - 174 346 IPR009091 -
Mal1g4271 1070 SUPERFAMILY PH domain-like 13 123 - -
Mal1g4271 1070 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 684 IPR013083 -
Mal1g4271 1070 MobiDBLite consensus disorder prediction 967 991 - -
Mal1g4271 1070 MobiDBLite consensus disorder prediction 772 808 - -
Mal1g4271 1070 Gene3D - 13 133 IPR011993 -
Mal1g4271 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 560 611 IPR000408 -
Mal1g4271 1070 MobiDBLite consensus disorder prediction 1050 1070 - -
Mal1g4271 1070 Pfam FYVE zinc finger 612 677 IPR000306 GO:0046872
Mal1g4271 1070 Coils Coil 846 887 - -
Mal1g4271 1070 Pfam Transcription factor regulating root and shoot growth via Pin3 991 1045 IPR013591 -
Mal1g4271 1070 PRINTS Chromosome condensation regulator RCC1 signature 286 302 IPR000408 -
Mal1g4271 1070 PRINTS Chromosome condensation regulator RCC1 signature 393 407 IPR000408 -
Mal1g4271 1070 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Mal1g4271 1070 PRINTS Chromosome condensation regulator RCC1 signature 555 576 IPR000408 -
Mal1g4271 1070 PRINTS Chromosome condensation regulator RCC1 signature 497 515 IPR000408 -
Mal1g4271 1070 PRINTS Chromosome condensation regulator RCC1 signature 336 352 IPR000408 -
Mal1g4271 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 508 559 IPR000408 -
Mal1g4271 1070 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 429 439 IPR000408 -
Mal1g4271 1070 MobiDBLite consensus disorder prediction 919 954 - -
Mal1g4271 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 458 504 IPR000408 -
Mal1g4271 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 284 332 IPR000408 -
Mal1g4271 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 507 556 IPR000408 -
Mal1g4271 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 390 439 IPR000408 -
Mal1g4271 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 561 608 IPR000408 -
Mal1g4271 1070 Pfam Regulator of chromosome condensation (RCC1) repeat 335 387 IPR000408 -
Mal1g4271 1070 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 336 390 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4271 Mal-Chr1 97209988 97216690 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4271 988 1055 Major Intrinsic Protein MIP AT1G31880 30.882 5.01e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4271 - - gmx:100778984 1501.88