Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4267 ATGGTTAAAGCTCCTTGTTGTGAAAAGAAGGGATTGAAGAAAGGTCCATGGACCTTAGAGGAAGATGAAATCCTCACATCTTACATCAACAAACATGGACATAGTAATTGGCGTACCCTCCCTAAACATGCCGGTTTATTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAACTATTTAAGACCTGATATTAAGAGAGGAAATTTTACAAATGAAGAAGAGGAAATTATCATTAAGATGCACGAATTATTGGGGAACAGATGGTCAGGAATGGCAGCAAAATTACCTGGAAGAACAGACAATGAAATAAAAAATGTGTGGCACACTCACTTGAAGAAAAGACTATTGAATACAAGTAATAACCAACCCAATTCAAATACCAAAAAAACACTATCAAAACAAAAAATCAAAAGATCTGATTCCAATTCAAGCACTTTAATTCAATCATATGAACCTACTACTACATCATCAAATAGCACTTTTTCTAGTGATTTTTCATCACAAGGAAAAAATAAGGACAATAGCATCAATTGTGAAGACTCATTTGTGACAATGCCTGAAATTGATGAAAGTTTTTGGTCAGAGACAATAATTGATGATGAAATTAGTTCCACCATGCCAACAAATTCTATGACAATTTCAAATGAGCTACCAAATCAACAAAAACCTTCTAATAATTCAGTAGATAATTTTCAAAACCCTTTTGATGATGATGATGGCATGGATTTTTGGGTTGACTTGTTCATTAAATCAGGGGAATCAACAAACATTTTTTGA 780 0.3321 MVKAPCCEKKGLKKGPWTLEEDEILTSYINKHGHSNWRTLPKHAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEEIIIKMHELLGNRWSGMAAKLPGRTDNEIKNVWHTHLKKRLLNTSNNQPNSNTKKTLSKQKIKRSDSNSSTLIQSYEPTTTSSNSTFSSDFSSQGKNKDNSINCEDSFVTMPEIDESFWSETIIDDEISSTMPTNSMTISNELPNQQKPSNNSVDNFQNPFDDDDGMDFWVDLFIKSGESTNIF* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4267 259 SMART sant 66 114 IPR001005 -
Mal1g4267 259 SMART sant 13 63 IPR001005 -
Mal1g4267 259 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal1g4267 259 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal1g4267 259 CDD SANT 69 112 IPR001005 -
Mal1g4267 259 Gene3D - 13 66 - -
Mal1g4267 259 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal1g4267 259 CDD SANT 16 61 IPR001005 -
Mal1g4267 259 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal1g4267 259 MobiDBLite consensus disorder prediction 138 178 - -
Mal1g4267 259 MobiDBLite consensus disorder prediction 116 131 - -
Mal1g4267 259 Gene3D - 68 144 - -
Mal1g4267 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal1g4267 259 MobiDBLite consensus disorder prediction 116 178 - -
Mal1g4267 259 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal1g4267 259 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 253 - -
Mal1g4267 259 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 253 - -
Mal1g4267 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4267 Mal-Chr1 97063055 97142595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4267 1 249 MYB Transcription Factor Family AT2G31180 48.638 1.21e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal1g4267 Myb_DNA-binding 1.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3850 3 116330063 116332183 Mal1g4267 1 97063055 97142595 PCT