Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g4244 ATGTCTCATAAACCAAAAACCAATGTCAAATACCCTTCTTTCTCTTTCATTGATTATTCAACAACTAATCATACTGCAAAACAAAATATCATATGGACTTTTTCTTATTCTGTTCCTACTCATAATCACAATAATGTTGGTAAACAAAACAAACACTCATGTGATCTTTGCAACAAGGTTTTTACTTCTAACAAAGCATTGAATGGACATATGAGGTGTCACTCTCAAAAGGGTATTACTAACGCACCAACTGCAGCACCATCTTCCATTGATGATCAGTTTCTACCACCCAAGAAACGGCTAGCGCTCAGAAGAAAAAGATATTGCGATATTGATGATGAACTTACTGTTGTTGCTGAAACTCGCGACGCTAAAAGGCAAAAAATTCCAAGCAATATGGATTTGAACGAGCTTCCAAGTGATGATTTTGAAAATGAATCCAATTAG 447 0.3535 MSHKPKTNVKYPSFSFIDYSTTNHTAKQNIIWTFSYSVPTHNHNNVGKQNKHSCDLCNKVFTSNKALNGHMRCHSQKGITNAPTAAPSSIDDQFLPPKKRLALRRKRYCDIDDELTVVAETRDAKRQKIPSNMDLNELPSDDFENESN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g4244 148 Gene3D Classic Zinc Finger 31 86 - -
Mal1g4244 148 SMART c2h2final6 52 74 IPR013087 -
Mal1g4244 148 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Mal1g4244 148 SUPERFAMILY beta-beta-alpha zinc fingers 49 77 IPR036236 -
Mal1g4244 148 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Mal1g4244 148 MobiDBLite consensus disorder prediction 124 148 - -
Mal1g4244 148 Pfam C2H2-type zinc finger 52 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g4244 Mal-Chr1 96300033 96300479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g4244 37 143 C2H2 Transcription Factor Family AT2G28200 25.688 2.08e-06 43.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal1g4244 zf-C2H2_6 2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g4244 - - mtr:MTR_1g085590 128.642